RetrogeneDB ID: | retro_oind_104 | ||
Retrocopylocation | Organism: | Rice subsp. indica (Oryza sativa indica) | |
Coordinates: | AAAA02048438.1:223..1516(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | BGIOSGA017602 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.76 % |
Parental protein coverage: | 80.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIH |
EV.Q.LG.N.VR..AM..T.GL.RG..V..TG.P..VPVG.ATLGRI.NV.GEP.D..G...T....PIH | |
Retrocopy | EVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIH |
Parental | REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG |
R.APAF.E..T...I..TGIKVVDLLAPY.RGGKIGLFGGAGVGKTVLIMELINN.AKAHGG.SVF.GVG | |
Retrocopy | RSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVG |
Parental | ERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFI |
ERTREGNDLY.EM.ESGVI.......ESK.ALVY.QMNEPPGAR.RVGLT.LT.AE.FRD...QDVLLFI | |
Retrocopy | ERTREGNDLYMEMKESGVINXXXLE-ESKVALVYXQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFI |
Parental | DNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATT |
DNIFRF.QA.SEVSALLGR.PSAVGYQPTL.T..G.LQERIT.TKKGSITS.QA.YVPADDLTDPAPATT | |
Retrocopy | DNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKKGSITSIQAVYVPADDLTDPAPATT |
Parental | FAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDE |
FAHLDATTVLSR.....GIYPAVDPLDSTS.ML.P...G..HY.TA..V...LQ.YK.LQDIIAILG.DE | |
Retrocopy | FAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKQTLQRYKELQDIIAILGLDE |
Parental | LSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVNSFQGVLDGKYDDLPEQSFYMVGGIEE |
LSE.D.LTVARARKI.RFLSQPF.VAEVFTG.PGKYV.L.E....FQ..L.G..D.LPEQ.FY.VG.I.E | |
Retrocopy | LSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDE |
Parental | VIAKAEKIAKES |
...KA.....E. | |
Retrocopy | ASTKAINLEEEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00006p00059970 | 1 retrocopy | |
Arabidopsis thaliana | AT5G08670 | 1 retrocopy | |
Oryza sativa indica | BGIOSGA017602 | 2 retrocopies |
retro_oind_104 , retro_oind_87,
|
Brassica rapa | Bra006013 | 2 retrocopies | |
Chlamydomonas reinhardtii | CHLREDRAFT_78348 | 1 retrocopy | |
Aegilops tauschii | F775_32946 | 1 retrocopy | |
Hordeum vulgare | MLOC_70791 | 1 retrocopy | |
Oryza glaberrima | ORGLA01G0220100 | 1 retrocopy | |
Triticum aestivum | TRAES3BF058700080CFD_g | 2 retrocopies |