RetrogeneDB ID: | retro_atri_7 | ||
Retrocopylocation | Organism: | Amborella (Amborella trichopoda) | |
Coordinates: | AmTr_v1.0_scaffold00334:18755..20135(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | AMTR_s00334p00013670 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | AMTR_s00006p00059970 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.09 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ILTALEVLDNSIRLVLEVAQHLGEKMVRTIAMDGTEGLVRGQRVLNTGSPIKVPVGRATLGRIINVIGEP |
I.......D..I....EV.Q.LG...VR..AM..T.GL.RG..V..TG.P..VPVG.ATLGRI.NV.GEP | |
Retrocopy | IVKGRDTVDQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMDVIDTGAPLSVPVGGATLGRIFNVLGEP |
Parental | IDERGEIKTDHYLPIHREAPSFVEQATEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN |
ID..G...T....PIHR.AP.F....T...I..TGIKVVDLLAPY.RGGKIGLFGGAGVGKTVLIMELIN | |
Retrocopy | IDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN |
Parental | NVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQAESKCALVYGQMNEPPGARARVGLTGLTV |
N.AKAHGG.SVF.GVGERTREGNDLY.EM.ESGVI......AESK.ALVYGQMNEPPGAR.RVGLT.LT. | |
Retrocopy | NIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALTM |
Parental | AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQA |
AE.FRD...QDVLLFIDNIFRF.QA.SEVSALLGR.PSAVGYQPTL.T..G.LQERIT.TK.GSITS.QA | |
Retrocopy | AEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQA |
Parental | IYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGQDHYNTARGVQKVLQ |
.YVPADDLTDPAPATTFAHLDATTVLSR.....GIYPAVDPLDSTS.ML.P.I.G..HY.TA..V...LQ | |
Retrocopy | VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQ |
Parental | NYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIVSFQGVLDGKY |
.YK.LQDIIAILG.DELSE.D.LTVARARKI.RFLSQPF.VAEVFTG.PGKYV.L.E.I..F...L.G.. | |
Retrocopy | RYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIKGFKLILSGEL |
Parental | DDLPEQSFYMVGGIEEVIAKAEKIAKES |
D.LPEQ.FY.VG.I.E..AKA.....E. | |
Retrocopy | DGLPEQAFYLVGNIDEATAKATNLEMEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00006p00059970 | 1 retrocopy |
retro_atri_7 ,
|
Arabidopsis thaliana | AT5G08670 | 1 retrocopy | |
Oryza sativa indica | BGIOSGA017602 | 2 retrocopies | |
Brassica rapa | Bra006013 | 2 retrocopies | |
Chlamydomonas reinhardtii | CHLREDRAFT_78348 | 1 retrocopy | |
Aegilops tauschii | F775_32946 | 1 retrocopy | |
Hordeum vulgare | MLOC_70791 | 1 retrocopy | |
Oryza glaberrima | ORGLA01G0220100 | 1 retrocopy | |
Triticum aestivum | TRAES3BF058700080CFD_g | 2 retrocopies |