RetrogeneDB ID: | retro_hvul_13 | ||
Retrocopylocation | Organism: | Barley (Hordeum vulgare) | |
Coordinates: | Pt:52114..53611(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | EPlHVUG00000010007 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MLOC_70791 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.42 % |
Parental protein coverage: | 99.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDGTEGLVRGQKVLNTGSPITVPVGRATLGRIINVIGEPIDHKGDIKTNSYLPIHREAPAFVEQATEQQI |
M..T.GL.RG..V..TG.P..VPVG.ATLGRI.NV.GEP.D..G........PIHR.APAF.E..T...I | |
Retrocopy | MSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDSSATFPIHRSAPAFIELDTKLSI |
Parental | LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE |
..TGIKVVDLLAPY.RGGKIGLFGGAGVGKTVLIMELINN.AKAHGG.SVF.GVGERTREGNDLY.EM.E | |
Retrocopy | FETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKE |
Parental | SGVIKLDDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSA |
SGVI.......ESK.ALVYGQMNEPPGAR.RVGLT.LT.AE.FRD...QDVLLFIDNIFRF.QA.SEVSA | |
Retrocopy | SGVIN-EKNIEESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSA |
Parental | LLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIS |
LLGR.PSAVGYQPTL.T..G.LQERI..TKKGSITS.QA.YVPADDLTDPAPATTFAHLDATTVLSR... | |
Retrocopy | LLGRMPSAVGYQPTLSTEMGSLQERIASTKKGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLA |
Parental | ELGIYPAVDPLDSTSRMLSPHVLGQEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI |
..GIYPAVDPLDSTS.ML.P...G.EHY.TA..V...LQ.YK.LQDIIAILG.DELSE.D.LTVARARKI | |
Retrocopy | SKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKI |
Parental | QRFLSQPFHVAEVFTGAPGKYVELKEGVQSFQGVLDGKYDDLSEQAFYMVGGIEEVIAKAEKIAKEN |
.RFLSQPF.VAEVFTG.PGKYV.L.E....FQ..L.G..D.L.EQAFY.VG.I.E...KA.....EN | |
Retrocopy | ERFLSQPFFVAEVFTGSPGKYVALAETIRGFQLILSGELDGLPEQAFYLVGNIDEASTKAITLEEEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00006p00059970 | 1 retrocopy | |
Arabidopsis thaliana | AT5G08670 | 1 retrocopy | |
Oryza sativa indica | BGIOSGA017602 | 2 retrocopies | |
Brassica rapa | Bra006013 | 2 retrocopies | |
Chlamydomonas reinhardtii | CHLREDRAFT_78348 | 1 retrocopy | |
Aegilops tauschii | F775_32946 | 1 retrocopy | |
Hordeum vulgare | MLOC_70791 | 1 retrocopy |
retro_hvul_13 ,
|
Oryza glaberrima | ORGLA01G0220100 | 1 retrocopy | |
Triticum aestivum | TRAES3BF058700080CFD_g | 2 retrocopies |