Parental gene: | ORGLA01G0220100 |
| Aliases: | None |
| Description: | ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:I1NQR1] |
| Organism: | African rice (Oryza glaberrima) |
| Coordinates: | 1:20300874..20304731(+) |
>ORGLA01G0220100
NNNNNNNNNCCGGGCCCTCACCTCCGTCCTCCGCTCCGCCTCCCGCCTCCGCGCCGCCTCCCCTTCCCCGTGCCCGCGCC
GCGCGCCGCTCCACCCCACCACCGCCCGTCCCCCGCGGGCTTCCTCCTGAACCGCGCCGCCGCCGCCTACGCGTCGTCCG
CCGCGGCGCAGGCGGCCCCTGCGCCTCCCCCCGCGTCGGGCAAGGCCACCGGGGGCGGCAAGATCACCGATGAGTTCACG
GGCGCTGGCGCCGTCGGGCAGGTGTGCCAGGTGATTGGCGCCGTCGTGGACGTGCGGTTCGACGAGGGCCTGCCCCCGAT
CCTGACCGCGCTGGAGGTGCTCGACCACAACATCCGCCTCGTGCTCGAGGTGGCGCAGCATCTCGGGGAGAACATGGTGC
GCACCATCGCCATGGACGGGACCGAGGGGCTCGTTCGCGGCCAGCGCGTGCTCAACACCGGCTCTCCCATCACTGTTCCT
GTTGGTAGGGCCACACTTGGGCGTATTATGAATGTCATCGGTGAGCCTATTGATGAGAAGGGAGATATCACAACAAACCA
CTTCCTCCCTATCCATCGTGAAGCCCCTGCTTTTGTTGAGCAAGCTACAGAGCAACAGATTCTTGTTACTGGAATTAAGG
TCGTGGATCTCCTTGCACCTTATCAAAGAGGTGGTAAAATTGGTCTCTTCGGTGGTGCTGGGGTGGGCAAAACTGTACTT
ATTATGGAGTTGATCAACAATGTTGCGAAGGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAACGTACTCGTGA
GGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTGATTAAGCTTGGTGACAAGCAGAGTGAGAGCAAGTGTGCTC
TTGTCTACGGGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGACTGACTGGTTTGACTGTTGCCGAGCATTTC
CGTGATGCTGAAGGGCAGGATGTGCTTCTCTTCATTGATAACATTTTCCGTTTCACTCAGGCAAACTCCGAGGTGTCTGC
CCTGCTTGGACGTATCCCATCTGCTGTGGGATACCAGCCAACCCTTGCTACTGATCTTGGAGGACTGCAGGAGCGGATTA
CCACCACAAAGAAGGGTTCTATCACATCTGTTCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCT
ACTACATTTGCCCATCTTGATGCTACTACTGTGTTGTCACGACAGATTTCTGAGCTTGGTATTTATCCTGCTGTCGATCC
TTTGGATTCCACATCCAGAATGTTGTCTCCCCATGTACTGGGTGAGGACCACTACAACACAGCTCGTGGTGTTCAGAAGG
TTCTTCAGAATTACAAGAATCTTCAAGATATTATTGCCATTCTGGGAATGGACGAGCTCAGTGAGGATGATAAGTTGACA
GTCGCTCGTGCTAGGAAGATTCAGCGGTTCCTTAGCCAGCCCTTCCACGTTGCCGAAGTTTTCACGGGTGCACCTGGAAA
GTATGTTGAGCTGAAGGAGAGCGTTCAAAGTTTCCAGGGTGTATTGGACGGGAAGTATGATGACCTTCCTGAGCAGTCAT
TCTACATGGTTGGAGGAATCGATGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAGTCCGCTTCATAA
NNNNNNNNNCCGGGCCCTCACCTCCGTCCTCCGCTCCGCCTCCCGCCTCCGCGCCGCCTCCCCTTCCCCGTGCCCGCGCC
GCGCGCCGCTCCACCCCACCACCGCCCGTCCCCCGCGGGCTTCCTCCTGAACCGCGCCGCCGCCGCCTACGCGTCGTCCG
CCGCGGCGCAGGCGGCCCCTGCGCCTCCCCCCGCGTCGGGCAAGGCCACCGGGGGCGGCAAGATCACCGATGAGTTCACG
GGCGCTGGCGCCGTCGGGCAGGTGTGCCAGGTGATTGGCGCCGTCGTGGACGTGCGGTTCGACGAGGGCCTGCCCCCGAT
CCTGACCGCGCTGGAGGTGCTCGACCACAACATCCGCCTCGTGCTCGAGGTGGCGCAGCATCTCGGGGAGAACATGGTGC
GCACCATCGCCATGGACGGGACCGAGGGGCTCGTTCGCGGCCAGCGCGTGCTCAACACCGGCTCTCCCATCACTGTTCCT
GTTGGTAGGGCCACACTTGGGCGTATTATGAATGTCATCGGTGAGCCTATTGATGAGAAGGGAGATATCACAACAAACCA
CTTCCTCCCTATCCATCGTGAAGCCCCTGCTTTTGTTGAGCAAGCTACAGAGCAACAGATTCTTGTTACTGGAATTAAGG
TCGTGGATCTCCTTGCACCTTATCAAAGAGGTGGTAAAATTGGTCTCTTCGGTGGTGCTGGGGTGGGCAAAACTGTACTT
ATTATGGAGTTGATCAACAATGTTGCGAAGGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAACGTACTCGTGA
GGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTGATTAAGCTTGGTGACAAGCAGAGTGAGAGCAAGTGTGCTC
TTGTCTACGGGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGACTGACTGGTTTGACTGTTGCCGAGCATTTC
CGTGATGCTGAAGGGCAGGATGTGCTTCTCTTCATTGATAACATTTTCCGTTTCACTCAGGCAAACTCCGAGGTGTCTGC
CCTGCTTGGACGTATCCCATCTGCTGTGGGATACCAGCCAACCCTTGCTACTGATCTTGGAGGACTGCAGGAGCGGATTA
CCACCACAAAGAAGGGTTCTATCACATCTGTTCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCT
ACTACATTTGCCCATCTTGATGCTACTACTGTGTTGTCACGACAGATTTCTGAGCTTGGTATTTATCCTGCTGTCGATCC
TTTGGATTCCACATCCAGAATGTTGTCTCCCCATGTACTGGGTGAGGACCACTACAACACAGCTCGTGGTGTTCAGAAGG
TTCTTCAGAATTACAAGAATCTTCAAGATATTATTGCCATTCTGGGAATGGACGAGCTCAGTGAGGATGATAAGTTGACA
GTCGCTCGTGCTAGGAAGATTCAGCGGTTCCTTAGCCAGCCCTTCCACGTTGCCGAAGTTTTCACGGGTGCACCTGGAAA
GTATGTTGAGCTGAAGGAGAGCGTTCAAAGTTTCCAGGGTGTATTGGACGGGAAGTATGATGACCTTCCTGAGCAGTCAT
TCTACATGGTTGGAGGAATCGATGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAGTCCGCTTCATAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Amborella trichopoda | AMTR_s00006p00059970 | ortholog_one2many | 1 retrogene | |
| Arabidopsis thaliana | AT5G08670 | ortholog_many2many | 1 retrogene | |
| Oryza sativa indica | BGIOSGA017602 | ortholog_one2many | 2 retrogenes | |
| Brassica rapa | Bra006013 | ortholog_many2many | 2 retrogenes | |
| Chlamydomonas reinhardtii | CHLREDRAFT_78348 | ortholog_one2many | 1 retrogene | |
| Aegilops tauschii | F775_32946 | ortholog_many2many | 1 retrogene | |
| Hordeum vulgare | MLOC_70791 | ortholog_many2many | 1 retrogene | |
| Triticum aestivum | TRAES3BF058700080CFD_g | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ogla_47 | 68.72 | 78.60 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ORGLA01G0220100 retrocopies