Parental gene: | Bra006013 |
| Aliases: | None |
| Description: | AT5G08690 (E=1e-281) | ATP synthase beta chain 2, mitochondrial |
| Organism: | Chinese cabbage (Brassica rapa) |
| Coordinates: | A03:1620151..1622634(-) |
>Bra006013
ATGGCGTCTCGGAGAGTCTTATCATCACTTCTCCGTTCATCTTCCGGCAGATCCGCCGCCAAATTCACCAGCCGAAACCC
TAGGCTCCCGTCTCCTTCCCCCGCTCGATGCGCCGCTCCTTTCGGTAACCTCCTCGGACGCGTCGCCGAGTATTCGACCT
CCTCGCCAGCTCCCCCGTCGTCTGCTGCTCCGGCTAAGGATGAGGCGAAGAAGACTTATGATTACGGTGGAAAAGGCGCG
ATCGGGAAGGTGTGCCAGGTCATCGGTGCTATTGTCGATGTGAGATTCGAAGATCAGGAGGGATTGCCTCCGATCATGAC
GTCTCTGGAGGTGCAGGATCACCCGACGAGGCTGGTGCTTGAGGTGTCTCATCACTTGGGTCAGAATGTGGTCAGGACTA
TTGCTATGGATGGTACTGAGGGGCTTGTTCGCGGGAGGCGCGTGCTCAACACTGGCGCTCCGATCACTGTCCCTGTTGGA
AGAGCTACCCTTGGACGTATTATGAATGTTCTTGGAGAACCAATTGATGAGAGAGGCGAGATTAAGACCGAGCACTACCT
ACCTATTCACAGAGATGCTCCAGCTTTGGTTGATCTAGCCACTGGTCAAGAGATCCTTGCTACTGGTATTAAGGTTGTTG
ATCTGCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGTGGTGCTGGTGTCGGGAAAACTGTGCTCATTATG
GAACTGATTAACAATGTCGCCAAAGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAAAGAACCCGTGAAGGCAA
TGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTAGGCGAGAAGCAGTCTGAGAGCAAATGTGCTCTTGTGT
ACGGACAAATGAACGAGCCCCCGGGTGCCCGTGCTCGTGTTGGACTTACCGGTTTGACTGTTGCAGAGTATTTCCGTGAT
GCCGAAGGTCAAGATGTGTTGCTCTTCATTGATAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTGCT
CGGACGTATCCCATCAGCTGTCGGTTACCAGCCAACTCTGGCTTCTGATCTTGGTGCTCTTCAAGAGCGAATCACAACCA
CCAAGAAAGGTTCCATCACCTCAGTCCAAGCCATCTATGTTCCTGCTGACGATCTGACAGATCCTGCTCCAGCCACAACT
TTCGCTCACTTGGATGCCACAACTGTGCTCTCGAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTGGATCCTCTGGA
TTCGACATCCCGTATGCTGTCCCCTCACATTTTGGGTGAGGAGCACTACAACACGGCTCGTGGTGTGAAGAAAGTGGTAC
AGAACTACAAGAATCTGCAAGATATTATCGCCATTCTGGGAATGGACGAGCTAAGTGAAGATGACAAGCTTACCGTTGCC
CGTGCCCGTAAGATCCAGAGGTTCTTGAGTCAGCCTTTCCATGTTGCTGAGATCTTCACGGGTGCCCCCGGAAAATACGT
TGACCTTAAGGAAAACATCAACAGTTTCCAGGGCTTGCTAGATGGCAAGTACGATGATCTTCCAGAACAGTCGTTTTACA
TGGTTGGTGGAATCGACGAGGTGGTTGCCAAGGCAGAGAAGATCTCCAAGGAGGCAGCAGCTTAA
ATGGCGTCTCGGAGAGTCTTATCATCACTTCTCCGTTCATCTTCCGGCAGATCCGCCGCCAAATTCACCAGCCGAAACCC
TAGGCTCCCGTCTCCTTCCCCCGCTCGATGCGCCGCTCCTTTCGGTAACCTCCTCGGACGCGTCGCCGAGTATTCGACCT
CCTCGCCAGCTCCCCCGTCGTCTGCTGCTCCGGCTAAGGATGAGGCGAAGAAGACTTATGATTACGGTGGAAAAGGCGCG
ATCGGGAAGGTGTGCCAGGTCATCGGTGCTATTGTCGATGTGAGATTCGAAGATCAGGAGGGATTGCCTCCGATCATGAC
GTCTCTGGAGGTGCAGGATCACCCGACGAGGCTGGTGCTTGAGGTGTCTCATCACTTGGGTCAGAATGTGGTCAGGACTA
TTGCTATGGATGGTACTGAGGGGCTTGTTCGCGGGAGGCGCGTGCTCAACACTGGCGCTCCGATCACTGTCCCTGTTGGA
AGAGCTACCCTTGGACGTATTATGAATGTTCTTGGAGAACCAATTGATGAGAGAGGCGAGATTAAGACCGAGCACTACCT
ACCTATTCACAGAGATGCTCCAGCTTTGGTTGATCTAGCCACTGGTCAAGAGATCCTTGCTACTGGTATTAAGGTTGTTG
ATCTGCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGTCTCTTTGGTGGTGCTGGTGTCGGGAAAACTGTGCTCATTATG
GAACTGATTAACAATGTCGCCAAAGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAAAGAACCCGTGAAGGCAA
TGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTAGGCGAGAAGCAGTCTGAGAGCAAATGTGCTCTTGTGT
ACGGACAAATGAACGAGCCCCCGGGTGCCCGTGCTCGTGTTGGACTTACCGGTTTGACTGTTGCAGAGTATTTCCGTGAT
GCCGAAGGTCAAGATGTGTTGCTCTTCATTGATAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTGTCTGCTTTGCT
CGGACGTATCCCATCAGCTGTCGGTTACCAGCCAACTCTGGCTTCTGATCTTGGTGCTCTTCAAGAGCGAATCACAACCA
CCAAGAAAGGTTCCATCACCTCAGTCCAAGCCATCTATGTTCCTGCTGACGATCTGACAGATCCTGCTCCAGCCACAACT
TTCGCTCACTTGGATGCCACAACTGTGCTCTCGAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTGGATCCTCTGGA
TTCGACATCCCGTATGCTGTCCCCTCACATTTTGGGTGAGGAGCACTACAACACGGCTCGTGGTGTGAAGAAAGTGGTAC
AGAACTACAAGAATCTGCAAGATATTATCGCCATTCTGGGAATGGACGAGCTAAGTGAAGATGACAAGCTTACCGTTGCC
CGTGCCCGTAAGATCCAGAGGTTCTTGAGTCAGCCTTTCCATGTTGCTGAGATCTTCACGGGTGCCCCCGGAAAATACGT
TGACCTTAAGGAAAACATCAACAGTTTCCAGGGCTTGCTAGATGGCAAGTACGATGATCTTCCAGAACAGTCGTTTTACA
TGGTTGGTGGAATCGACGAGGTGGTTGCCAAGGCAGAGAAGATCTCCAAGGAGGCAGCAGCTTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Amborella trichopoda | AMTR_s00006p00059970 | ortholog_one2many | 1 retrogene | |
| Arabidopsis thaliana | AT5G08670 | ortholog_many2many | 1 retrogene | |
| Oryza sativa indica | BGIOSGA017602 | ortholog_many2many | 2 retrogenes | |
| Chlamydomonas reinhardtii | CHLREDRAFT_78348 | ortholog_one2many | 1 retrogene | |
| Aegilops tauschii | F775_32946 | ortholog_many2many | 1 retrogene | |
| Hordeum vulgare | MLOC_70791 | ortholog_many2many | 1 retrogene | |
| Oryza glaberrima | ORGLA01G0220100 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_brap_51 | 72.45 | 77.98 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_brap_57 | 70.14 | 79.60 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all Bra006013 retrocopies