RetrogeneDB ID: | retro_crei_1 | ||
Retrocopylocation | Organism: | Chlamydomonas reinhardtii | |
Coordinates: | BK000554:160164..161640(-) | ||
Located in intron of: | DAA01471 | ||
Retrocopyinformation | Ensembl ID: | DAA00958 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | CHLREDRAFT_78348 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.33 % |
Parental protein coverage: | 75.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GHNVRLVLEVAQHMGDNTVRCVAMDSTDGLVRGQKVVNTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIE |
G.......EV.Q..GDN.VR.V.M..T.GL.RG..VV.TG.P..VPVG..TLGRI.NV.GEPVD..G... | |
Retrocopy | GTEMAVTCEVQQLLGDNCVRAVSMNPTEGLMRGMEVVDTGKPLSVPVGKVTLGRIFNVLGEPVDNMGNVK |
Parental | CSEVWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG |
..E...IHR.AP.F....T...I..TGIKVVDLLAPY.RGGKIGLFGGAGVGKTVLIMELINN.AKAHGG | |
Retrocopy | VEETLPIHRTAPAFVDLDTRLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGG |
Parental | FSVFAGVGERTREGNDLYREMIESGVIKLGDKRGESKCTLVYGQMNEPPGARARVALTGLTVAEYFRDVE |
.SVFAGVGERTREGNDLY.EM.ESGVI........SK..LVYGQMNEPPGAR.RVALT.LT.AEYFRDV. | |
Retrocopy | VSVFAGVGERTREGNDLYTEMKESGVI-VEKNLSDSKVALVYGQMNEPPGARMRVALTALTMAEYFRDVN |
Parental | GQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTTKGSITSVQAVYVPADDL |
.QDVL.F.DNIFRF.QA..EVSALLGR.PSAVGYQPTLAT..GGLQERIT.T..GSITS.QAVYVPADDL | |
Retrocopy | KQDVLFFIDNIFRFVQAGAEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDL |
Parental | TDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLNPNIIGAEHYNIARGVQKVLQDYKNLQDI |
TDPAPATTFAHLDATTVLSR..A..GIYPAVDPL.STS.ML.P.I.G..HY..A..V.K.LQ.YK.LQDI | |
Retrocopy | TDPAPATTFAHLDATTVLSRNLAAKGIYPAVDPLESTSTMLQPWILGEKHYDSAQSVKKTLQRYKELQDI |
Parental | IAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGTPGKYVDLKDTISAFTGILQGKYDDLPEMAF |
IAILG.DELSEED.L.VARARKI.RFLSQPF.VAEVFTG.PGKYV.L..TI..F..I..G..DDLPE.AF | |
Retrocopy | IAILGLDELSEEDRLIVARARKIERFLSQPFFVAEVFTGSPGKYVSLAETIEGFGKIFAGELDDLPEQAF |
Parental | YMVGGIHEVVEKADKL |
Y.VG.I.E...KA..L | |
Retrocopy | YLVGNITEAISKAASL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00006p00059970 | 1 retrocopy | |
Arabidopsis thaliana | AT5G08670 | 1 retrocopy | |
Oryza sativa indica | BGIOSGA017602 | 2 retrocopies | |
Brassica rapa | Bra006013 | 2 retrocopies | |
Chlamydomonas reinhardtii | CHLREDRAFT_78348 | 1 retrocopy |
retro_crei_1 ,
|
Aegilops tauschii | F775_32946 | 1 retrocopy | |
Hordeum vulgare | MLOC_70791 | 1 retrocopy | |
Oryza glaberrima | ORGLA01G0220100 | 1 retrocopy | |
Triticum aestivum | TRAES3BF058700080CFD_g | 2 retrocopies |