RetrogeneDB ID: | retro_ogla_47 | ||
Retrocopylocation | Organism: | African rice (Oryza glaberrima) | |
Coordinates: | 1:10263249..10264556(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ORGLA01G0220100 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.72 % |
Parental protein coverage: | 78.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNH |
I....EV.Q.LG.N.VR..AM..T.GL.RG..V..TG.P..VPVG.ATLG.I.N..GEP.D..G...T.. | |
Retrocopy | INVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGEATLG*IFNILGEPVDNLGPVDTSA |
Parental | FLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV |
..PIHR.APA..E..T...I..TGIK.VDLLAPYQRGGKIGLFGGAGVGKT.LIMELINN.AKAHGG.SV | |
Retrocopy | TFPIHRSAPASIELDTKLSIFETGIKAVDLLAPYQRGGKIGLFGGAGVGKTILIMELINNIAKAHGGVSV |
Parental | FAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQD |
F.GVGERTREGNDLY.EM.ESGVI.......ES..ALVYGQMNEPPGAR.RVGLT..T.AE.FRD...QD | |
Retrocopy | FGGVGERTREGNDLYMEMKESGVINXXXLE-ESTVALVYGQMNEPPGARMRVGLTAQTMAEYFRDVNKQD |
Parental | VLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKK-GSITSVQAIYVPADDLTD |
VLLFIDNIFRF.QA.SEVSALL.R.PSAVGYQPTL.T..G.LQERIT.TKK.GSITS.QA.YVPADDLTD | |
Retrocopy | VLLFIDNIFRFVQAGSEVSALLRRMPSAVGYQPTLSTEMGSLQERITYTKK<GSITSIQAVYVPADDLTD |
Parental | PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIA |
PA.A.TFAHLDATTVLSR.....GIYPAVDPLDSTS.ML.P...G..HY.TA..V...LQ.YK.LQDIIA | |
Retrocopy | PAHAITFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGNEHYETAQRVKQTLQRYKELQDIIA |
Parental | ILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVQSFQGVLDGKYDDLPEQSFYM |
IL..DELSE.D.LTVARARKI.RFLSQPF.VA.VFT..PGKYV.L.E....FQ..L.G..D.LPEQ.FY. | |
Retrocopy | ILRLDELSEEDRLTVARARKIERFLSQPFFVADVFTSSPGKYVGLAETIRGFQLILSGELDVLPEQAFYL |
Parental | VGGIDEVIAKAEKIAKES |
VG.IDE...KA.....E. | |
Retrocopy | VGNIDEASTKAINLEEEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00006p00059970 | 1 retrocopy | |
Arabidopsis thaliana | AT5G08670 | 1 retrocopy | |
Oryza sativa indica | BGIOSGA017602 | 2 retrocopies | |
Brassica rapa | Bra006013 | 2 retrocopies | |
Chlamydomonas reinhardtii | CHLREDRAFT_78348 | 1 retrocopy | |
Aegilops tauschii | F775_32946 | 1 retrocopy | |
Hordeum vulgare | MLOC_70791 | 1 retrocopy | |
Oryza glaberrima | ORGLA01G0220100 | 1 retrocopy |
retro_ogla_47 ,
|
Triticum aestivum | TRAES3BF058700080CFD_g | 2 retrocopies |