RetrogeneDB ID: | retro_brap_57 | ||
Retrocopylocation | Organism: | Chinese cabbage (Brassica rapa) | |
Coordinates: | Scaffold000609:1..1320(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bra006013 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.14 % |
Parental protein coverage: | 79.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRRVLNTGAPITVPVGRATLGRIMNVLGEP |
...S....D.......EV...LG.N.VR..AM..T.GL.RG..V..TGAP..VPVG.ATLGRI.NVLGEP | |
Retrocopy | VVQSRDPADKQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEP |
Parental | IDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN |
.D..G........PIHR.APA...L.T...I..TGIKVVDLLAPY.RGGKIGLF...GVGKTVLIMELIN | |
Retrocopy | VDNLGPVDSSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFXXXGVGKTVLIMELIN |
Parental | NVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTV |
N.AKAHGG.SVF.GVGERTREGNDLY.EM.ESGVI.......ESK.ALVYGQMNEPPGAR.RVGLT.LT. | |
Retrocopy | NIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINXXXIE-ESKVALVYGQMNEPPGARMRVGLTALTM |
Parental | AEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKKGSI-TSVQ |
AEYFRD...QDVLLFIDNIFRF.QA.SEVSALLGR.PSAVGYQPTL....G.LQERI..TKKGSI.TS.Q | |
Retrocopy | AEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERIASTKKGSI<TSIQ |
Parental | AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVKKVV |
A.YVPADDLTDPAPATTFAHLDATTVLSR.....GIYPAVDPLDSTS.ML.P.I.G.EHY.TA..VK... | |
Retrocopy | AVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGNEHYETAQRVKETL |
Parental | QNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGK |
Q.YK.LQDIIAILG.DELSE.D.LTVARARKI.RFLSQPF.VAE.FTG.PGKYV.L.E.I..FQ..L.G. | |
Retrocopy | QRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVALAETIRGFQLILSGE |
Parental | YDDLPEQSFYMVGGIDEVVAKA |
.D.LPEQ.FY.VG.IDE...KA | |
Retrocopy | LDGLPEQAFYLVGNIDEASTKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00006p00059970 | 1 retrocopy | |
Arabidopsis thaliana | AT5G08670 | 1 retrocopy | |
Oryza sativa indica | BGIOSGA017602 | 2 retrocopies | |
Brassica rapa | Bra006013 | 2 retrocopies |
retro_brap_51, retro_brap_57 ,
|
Chlamydomonas reinhardtii | CHLREDRAFT_78348 | 1 retrocopy | |
Aegilops tauschii | F775_32946 | 1 retrocopy | |
Hordeum vulgare | MLOC_70791 | 1 retrocopy | |
Oryza glaberrima | ORGLA01G0220100 | 1 retrocopy |