Parental gene:

RPF2, ENSCAFG00000003918

Aliases:RPF2, BXDC1
Description:ribosome production factor 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20870]
Organism:Dog (Canis familiaris)
Coordinates:12:67516234..67566373(+)


>ENSCAFG00000003918
ATGGACGCTCTGGACCGAGTCGTAAAGCCCAAAACGAAAAGAGCAAAGAGATTCCTTGAGAAGAGAGAACCGAAACTCAG
TGAAAATATTAAAAATGCAATGTTGATTAAAGGGGGAAATGCGAATTCAATGGTGACACAAGTACTTAGAGATGTGTATG
CACTGAAAAAACCTTATGGTGTTCTGTATAAAAAGAAAAACATTACAAGACCATTTGAGGATCAGACATCATTGGAATTC
TTTTCAAAGAAGTCAGATTGTTCTTTATTTATGTTTGGCTCCCATAATAAGAAGCGGCCAAATAATCTAGTAATAGGTCG
TATGTATGATTACCATGTGCTGGATATGATTGAATTAGGTATCGAGAAGTTTGTCTCTCTAAAAGATGTTAAGAATAGTA
AATGTCCCGAGGGAACAAAACCCATGTTAATATTTGCTGGTGATGATTTTGATGTAACAGAAGACTATAGAAGGCTGAAA
AATCTTCTTATTGATTTCTTCAGAGGCCCCACGGTATCAAATATCCGTCTGGCTGGTTTAGAGTATGTTCTGCACTTCAC
TGCACTGAATGGGAAAATTTACTTCCGAAGCTATAAGTTGCTGCTGAAGAAATCCGGTTGTAGAACACCAAGGATTGAAT
TGGAAGAGATGGGGCTCTCGTTGGATCTGGTTCTGAGGAGGACACGTCTGGCTTCAGATGATCTTTATAAATTATCTATG
AAAATGCCAAAAGCCCTCAAGCCAAAGAAGAAGAAAAATGTCTCCCATGATACTTTTGGTACAACTTATGGAAGGATTCA
TATGCAGAAGCAAGACCTAAGCAAACTACAAACCAGGAAAATGAAGGGGTTGAAGAAGCGACCTGCAGAAAGGATAACAG
AAGACCAGGAGAAAAAATCAAAGAGAATTAAAAAAAATTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 12 .43 RPM
SRP017611_brain 15 .24 RPM
SRP017611_kidney 35 .73 RPM
SRP017611_liver 9 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005212 ortholog_one2one 6 retrogenes
retro_cjac_1675, retro_cjac_1768, retro_cjac_2244, retro_cjac_2473, retro_cjac_606, retro_cjac_933,
Cavia porcellus ENSCPOG00000006797 ortholog_one2one 2 retrogenes
retro_cpor_332, retro_cpor_582,
Equus caballus ENSECAG00000017121 ortholog_one2one 1 retrogene
retro_ecab_782,
Erinaceus europaeus ENSEEUG00000006169 ortholog_one2one 2 retrogenes
retro_eeur_454, retro_eeur_584,
Felis catus ENSFCAG00000001527 ortholog_one2one 1 retrogene
retro_fcat_1584,
Homo sapiens ENSG00000197498 ortholog_one2one 1 retrogene
retro_hsap_2425,
Gorilla gorilla ENSGGOG00000001469 ortholog_one2many 1 retrogene
retro_ggor_83,
Myotis lucifugus ENSMLUG00000005676 ortholog_one2one 2 retrogenes
retro_mluc_485, retro_mluc_921,
Macaca mulatta ENSMMUG00000021532 ortholog_one2one 1 retrogene
retro_mmul_1903,
Mus musculus ENSMUSG00000038510 ortholog_one2one 1 retrogene
retro_mmus_2234,
Nomascus leucogenys ENSNLEG00000012854 ortholog_one2one 3 retrogenes
retro_nleu_2024, retro_nleu_2434, retro_nleu_2445,
Oryctolagus cuniculus ENSOCUG00000016028 ortholog_one2one 1 retrogene
retro_ocun_831,
Pongo abelii ENSPPYG00000016925 ortholog_one2one 2 retrogenes
retro_pabe_1788, retro_pabe_2464,
Pan troglodytes ENSPTRG00000018503 ortholog_one2one 1 retrogene
retro_ptro_1398,
Rattus norvegicus ENSRNOG00000000587 ortholog_one2one 1 retrogene
retro_rnor_2336,
Tupaia belangeri ENSTBEG00000017151 ortholog_one2one 9 retrogenes
retro_tbel_1824, retro_tbel_2243, retro_tbel_2376, retro_tbel_2576, retro_tbel_3547, retro_tbel_3635, retro_tbel_3803, retro_tbel_3876, retro_tbel_4509,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_903 81.05 80.72
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2. retro_cfam_1611 83.50 66.34
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Download FASTA sequences of all ENSCAFG00000003918 retrocopies