RetrogeneDB ID: | retro_mluc_485 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | AAPE02069938:3885..4451(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPF2 | ||
Ensembl ID: | ENSMLUG00000005676 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.57 % |
Parental protein coverage: | 74.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VLDMIELGIEKFVSLKDIKNSK-CPEGTKPMLIFAGNDFDVTEDYRRLKSLLIDFF-RGPTVSNIRLAGL |
...MIELGIEKFVSLKDIKNSK..P.G...M.IFAGND.DVTED.RRLKSLLIDFF.RGP..SNI.LAGL | |
Retrocopy | IVRMIELGIEKFVSLKDIKNSK<IPRGN--M*IFAGNDSDVTEDNRRLKSLLIDFF>RGPAISNICLAGL |
Parental | EYVLHFTALNGKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKALKPKK |
EYVLHFTAL.GKIYF.SYKLLLK.SGCRTP..ELEEMGPSLDLVLRRTHLASDDLYK.SMKMPKALKPKK | |
Retrocopy | EYVLHFTALKGKIYFQSYKLLLKTSGCRTPWTELEEMGPSLDLVLRRTHLASDDLYKSSMKMPKALKPKK |
Parental | KKNISHDTFGTT-YGRIHMQKQDLSKLQTRKMKGLKKRPVERITEDQERKSKRI |
KKNISHDTFGTT.YGRIHMQ.QDL.KL.T.KMKGLKKRPVERITED.ERKSKRI | |
Retrocopy | KKNISHDTFGTT<YGRIHMQNQDLNKL*TGKMKGLKKRPVERITEDRERKSKRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003918 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000005212 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006797 | 2 retrocopies | |
Equus caballus | ENSECAG00000017121 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006169 | 2 retrocopies | |
Felis catus | ENSFCAG00000001527 | 1 retrocopy | |
Homo sapiens | ENSG00000197498 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001469 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005676 | 2 retrocopies |
retro_mluc_485 , retro_mluc_921,
|
Macaca mulatta | ENSMMUG00000021532 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038510 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012854 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016028 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016925 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018503 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000587 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017151 | 9 retrocopies |