RetrogeneDB ID:

retro_nleu_2445

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397356.1:7342195..7343011(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPF2
Ensembl ID:ENSNLEG00000012854
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2445
ATAGATGCTCTGCATTGAGTTGTAAAGCCCAAAATGAAAAGAGTCAAGAGATTCCTTGAGAAGAGAGAACCAAAACTCAA
TGAAAATATTAAAAATGCCATGCTGATTAAAGGGGGAAATGCAAATGCAACAGTGACACAAGTGCTTAAAGATGTGTGTG
CACTGAAAAAAACATATGGTGTACTGTATAAAAAGAAAAATATTACAAGACCTTTTGAGGATCAGACATCACTGGAATTA
TTTTCAAAGAAGTCAGATTGTTCTTTATTCATGTTTGGCTCCTATAATAAGAAGCAGCCAAATAATCTAGTAATAGGTCA
TATGTATGACTACCATGTGCTGGATATGATTGAATTAGGTATTGAGAATTTTGTCTCTCTAAAAGACATTAAGAACAGTA
AATGTCCTGAGGGAACAAAACCCATGCTAATATTTGCTGGTGATGATTTCAATGTAACAGAAGATTATAGAAGACTAAAA
AGTCTTCTTATTGATTTCTTCAGAGGCCCCACAGTATCAAATATCTGCCTGGCTGGATTAGAGTATGTTCTGCACTTCAC
TGCACTGAATGGGAAGACTTACTTTCGAAGCTATAAGTTGCTGTTGAAGAAATCTGGTTGCAGAACACCACGGATTGAAT
TGGAAGAGATAGGACCCTCATTGGATCTGTTTCTGAGGAGGACACACCTGGCATCCGATGACCTTTATAAATTATCTATG
AAAATGCCAAAAGCTCTCAAGCCAAAGAAGAAGAAAAATATCTCCAATGATACTTTTGGTACAACTTATGGAAGGATTCA
TGTGTAGAACCAAGAT

ORF - retro_nleu_2445 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.18 %
Parental protein coverage: 88.89 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMDTLDRVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTQVLKDVYALKKPYGVLYKKKNITR
.D.L..VVKPK.KR.KRFLEKREPKLNENIKNAMLIKGGNANATVTQVLKDV.ALKK.YGVLYKKKNITR
RetrocopyIDALH*VVKPKMKRVKRFLEKREPKLNENIKNAMLIKGGNANATVTQVLKDVCALKKTYGVLYKKKNITR
ParentalPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNGKCPEGTK
PFEDQTSLE.FSKKSDCSLFMFGS.NKK.PNNLVIG.MYDYHVLDMIELGIENFVSLKDIKN.KCPEGTK
RetrocopyPFEDQTSLELFSKKSDCSLFMFGSYNKKQPNNLVIGHMYDYHVLDMIELGIENFVSLKDIKNSKCPEGTK
ParentalPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKLLLKKSGCRTP
PMLIFAGDDF.VTEDYRRLKSLLIDFFRGPTVSNI.LAGLEYVLHFTALNGK.YFRSYKLLLKKSGCRTP
RetrocopyPMLIFAGDDFNVTEDYRRLKSLLIDFFRGPTVSNICLAGLEYVLHFTALNGKTYFRSYKLLLKKSGCRTP
ParentalRIELEEMGPSLNLVLRRTHLASDDLYKLSMKMPKALKPKKKKNISHDTFGATYGRIHMQKQD
RIELEE.GPSL.L.LRRTHLASDDLYKLSMKMPKALKPKKKKNIS.DTFG.TYGRIH...QD
RetrocopyRIELEEIGPSLDLFLRRTHLASDDLYKLSMKMPKALKPKKKKNISNDTFGTTYGRIHV*NQD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2445 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000039182 retrocopies
Callithrix jacchus ENSCJAG000000052126 retrocopies
Cavia porcellus ENSCPOG000000067972 retrocopies
Equus caballus ENSECAG000000171211 retrocopy
Erinaceus europaeus ENSEEUG000000061692 retrocopies
Felis catus ENSFCAG000000015271 retrocopy
Homo sapiens ENSG000001974981 retrocopy
Gorilla gorilla ENSGGOG000000014691 retrocopy
Myotis lucifugus ENSMLUG000000056762 retrocopies
Macaca mulatta ENSMMUG000000215321 retrocopy
Mus musculus ENSMUSG000000385101 retrocopy
Nomascus leucogenys ENSNLEG00000012854 3 retrocopies
retro_nleu_2024, retro_nleu_2434, retro_nleu_2445 ,
Oryctolagus cuniculus ENSOCUG000000160281 retrocopy
Pongo abelii ENSPPYG000000169252 retrocopies
Pan troglodytes ENSPTRG000000185031 retrocopy
Rattus norvegicus ENSRNOG000000005871 retrocopy
Tupaia belangeri ENSTBEG000000171519 retrocopies



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