Parental gene: | RPF2, ENSCPOG00000006797 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_58:8810515..8841183(-) |
>ENSCPOG00000006797
AAGCCCAAAACAAAAAGGGCCAAGAGATTCCTTGAGAAGAGGGAACCAAAACTTAGTGAAAACATTAAAAATGCCATGCT
GATTAAAGGGGGAAATGCAAATGCAACGGTGACACAAGTCCTGAAAGACGTGTATGCACTGAAAAAGCCATATGGAGTTC
TGTATAAAAAGAAAAACATTACTAGACCATTTGAGGATCAGACATCACTGGAATTCTTTTCAAAGAAGTCAGATTGTTCT
TTATTCATGTTTGGATCCCATAATAAGAAGCGACCCAATAACCTAGTGATAGGTCGTATGTATGACTACCATGTGCTGGA
TATGATTGAGTTAGGTATTGAGAAATTTGTGTCTCTAAAAGATATTAAGAACAGTAAGTGTCCTGAGGGAACAAAACCCA
TGTTAATATTTGCTGGTGATGATTTCGATGTAACAGAAGACTACAGAAGACTAAAAAGCCTCCTTATTGATTTCTTCAGA
GGCCCCACGGTAGCAAATGTCCGCCTGGCCGGGCTGGAGTACGTCCTGCACTTCACAGCTCTGCAGGGGAAGGTTTACTT
TCGCAGCTATAAGTTGCTCTTAAAGAAATCTGGTTGCAGAACACCACGGATTGAGCTGGAAGAAATGGGACCTTCTTTGG
ATCTGGTTCTGAGGAGGACACACCTGGCTTCAGATGACCTTTATAAGTTATCTATGAAAATGCCAAAAGCTCTCAAGCCA
AAGAAGAAGAAAAATATGTCCCAAGATACTTTTGGTACAACGTACGGAAGGATTCACATGCAGAAACAAGACCTAAGCAA
ACTGCAGACAAGGAAGATGAAGGGATTAAAGAAGCGACCTGCAGAAAGGATAACGGAAGACCAGGAGAAGAAGTCAAAGA
GAATTAAAAACAAT
AAGCCCAAAACAAAAAGGGCCAAGAGATTCCTTGAGAAGAGGGAACCAAAACTTAGTGAAAACATTAAAAATGCCATGCT
GATTAAAGGGGGAAATGCAAATGCAACGGTGACACAAGTCCTGAAAGACGTGTATGCACTGAAAAAGCCATATGGAGTTC
TGTATAAAAAGAAAAACATTACTAGACCATTTGAGGATCAGACATCACTGGAATTCTTTTCAAAGAAGTCAGATTGTTCT
TTATTCATGTTTGGATCCCATAATAAGAAGCGACCCAATAACCTAGTGATAGGTCGTATGTATGACTACCATGTGCTGGA
TATGATTGAGTTAGGTATTGAGAAATTTGTGTCTCTAAAAGATATTAAGAACAGTAAGTGTCCTGAGGGAACAAAACCCA
TGTTAATATTTGCTGGTGATGATTTCGATGTAACAGAAGACTACAGAAGACTAAAAAGCCTCCTTATTGATTTCTTCAGA
GGCCCCACGGTAGCAAATGTCCGCCTGGCCGGGCTGGAGTACGTCCTGCACTTCACAGCTCTGCAGGGGAAGGTTTACTT
TCGCAGCTATAAGTTGCTCTTAAAGAAATCTGGTTGCAGAACACCACGGATTGAGCTGGAAGAAATGGGACCTTCTTTGG
ATCTGGTTCTGAGGAGGACACACCTGGCTTCAGATGACCTTTATAAGTTATCTATGAAAATGCCAAAAGCTCTCAAGCCA
AAGAAGAAGAAAAATATGTCCCAAGATACTTTTGGTACAACGTACGGAAGGATTCACATGCAGAAACAAGACCTAAGCAA
ACTGCAGACAAGGAAGATGAAGGGATTAAAGAAGCGACCTGCAGAAAGGATAACGGAAGACCAGGAGAAGAAGTCAAAGA
GAATTAAAAACAAT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 7 .57 RPM |
| SRP017611_kidney | 11 .10 RPM |
| SRP017611_brain | 11 .27 RPM |
| SRP040447_lung | 9 .86 RPM |
| SRP040447_skeletal_muscle | 6 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000003918 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000005212 | ortholog_one2one | 6 retrogenes | |
| Equus caballus | ENSECAG00000017121 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000006169 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000001527 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000197498 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000001469 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005676 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000021532 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000038510 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012854 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016028 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016925 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000018503 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000000587 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000017151 | ortholog_one2one | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_332 | 75.83 | 69.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_582 | 70.74 | 61.74 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000006797 retrocopies