RetrogeneDB ID:

retro_mluc_921

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429782:14545581..14546067(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000022477
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RPF2
Ensembl ID:ENSMLUG00000005676
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_921
ATGTGAATATTTGCTGGTAATGCTTTTGATGTAACAGAAGACAACAGAAGGCTAAAAAGTCTCCTTATTGATTTTTTTCA
GGGGCCCTGCAATATCAAATATCTGCCTGGCTGGTTTAGAGTATGTCCTACACTTCACTGCACTGAAGGGGAAGATTTAC
TTTCAAAGCTATAAGCTGCTGTTGAAGACATCTGGTTGCAGAACACCATGGACTGAATTGGAAGAGATGGGACCCTCATT
GGATCTGGTGCTGAGGAGGACACATCTGGCCTCAGATGACCTTTATAAGTCATCCATGAAAATGCCAAAAGCCCTCAAGC
CAAAGAAAAAGAAAAATATCTCCCATGATACTTTTGGTACAACTATGGAAGGATTCATATGCAGAAGCAAGACCTAAACA
AACTACAAACCAGAAAAATGAAGGGGCTGAAAAAGCGACCTGTAGAAAGGATAACAGAAGACCGGGAGAGAAAATCAAAG
AGAATT

ORF - retro_mluc_921 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.24 %
Parental protein coverage: 63.53 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMLIFAGNDFDVTEDYRRLKSLLIDFF-RGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKLLLKKSGCRTP
M.IFAGN.FDVTED.RRLKSLLIDFF.RGP..SNI.LAGLEYVLHFTAL.GKIYF.SYKLLLK.SGCRTP
RetrocopyM*IFAGNAFDVTEDNRRLKSLLIDFF>RGPAISNICLAGLEYVLHFTALKGKIYFQSYKLLLKTSGCRTP
ParentalRIELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKALKPKKKKNISHDTFGTT-YGRIHMQKQDLSKLQTR
..ELEEMGPSLDLVLRRTHLASDDLYK.SMKMPKALKPKKKKNISHDTFGTT.YGRIHMQKQDL.KLQTR
RetrocopyWTELEEMGPSLDLVLRRTHLASDDLYKSSMKMPKALKPKKKKNISHDTFGTT<YGRIHMQKQDLNKLQTR
ParentalKMKGLKKRPVERITEDQERKSKRI
KMKGLKKRPVERITED.ERKSKRI
RetrocopyKMKGLKKRPVERITEDRERKSKRI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_921 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000039182 retrocopies
Callithrix jacchus ENSCJAG000000052126 retrocopies
Cavia porcellus ENSCPOG000000067972 retrocopies
Equus caballus ENSECAG000000171211 retrocopy
Erinaceus europaeus ENSEEUG000000061692 retrocopies
Felis catus ENSFCAG000000015271 retrocopy
Homo sapiens ENSG000001974981 retrocopy
Gorilla gorilla ENSGGOG000000014691 retrocopy
Myotis lucifugus ENSMLUG00000005676 2 retrocopies
retro_mluc_485, retro_mluc_921 ,
Macaca mulatta ENSMMUG000000215321 retrocopy
Mus musculus ENSMUSG000000385101 retrocopy
Nomascus leucogenys ENSNLEG000000128543 retrocopies
Oryctolagus cuniculus ENSOCUG000000160281 retrocopy
Pongo abelii ENSPPYG000000169252 retrocopies
Pan troglodytes ENSPTRG000000185031 retrocopy
Rattus norvegicus ENSRNOG000000005871 retrocopy
Tupaia belangeri ENSTBEG000000171519 retrocopies



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