RetrogeneDB ID: | retro_ecab_782 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:31559958..31560876(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPF2 | ||
Ensembl ID: | ENSECAG00000017121 | ||
Aliases: | None | ||
Description: | ribosome production factor 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20870] |
Percent Identity: | 90.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MDALDRVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANLTVTQVLRDVYALKKPYGVLYKKKNITR |
MDALD..VKPKTKRAKRF.EKREPKLSEN.KNAMLIKGGNAN.TVTQVLRDVYALKKPYGVLYKKKNITR | |
Retrocopy | MDALD*AVKPKTKRAKRFFEKREPKLSENTKNAMLIKGGNANSTVTQVLRDVYALKKPYGVLYKKKNITR |
Parental | PFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIEKFVSLKDIKNSKCPEGTK |
PFEDQTSLEFFSKKSDCSLFMFG.HNKKRPNNLVIG.MYDYHVLD.IE.GI.KFVSLKDIKN.KCP.GTK | |
Retrocopy | PFEDQTSLEFFSKKSDCSLFMFGPHNKKRPNNLVIGCMYDYHVLDLIESGIQKFVSLKDIKNGKCPQGTK |
Parental | PMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKLLLKKSGCRTP |
P.LIFAGDDFDVTEDY.RLKSLLIDFFRGPTVSNI.LAGLEYVLHFTALNGKI.F.SYKLLLKKSGCRT. | |
Retrocopy | PTLIFAGDDFDVTEDYKRLKSLLIDFFRGPTVSNICLAGLEYVLHFTALNGKI*FQSYKLLLKKSGCRTR |
Parental | RIELEEMGPSLDLVLRRTHLASDDLYKLSMKTPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQTRK |
..ELEE.GPSLDLVLRRTHLASDDLYKLS.K.PKALKP.KKKN.SH.TF.TTYGRIH.QKQDLSKLQTRK | |
Retrocopy | WTELEEIGPSLDLVLRRTHLASDDLYKLSVKSPKALKPNKKKNLSHGTFSTTYGRIHLQKQDLSKLQTRK |
Parental | MKGLKKRPAERITEDQEKKSKKMKKH |
MKGLKKRPAERITEDQEKKSKKM.KH | |
Retrocopy | MKGLKKRPAERITEDQEKKSKKMRKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 3 .36 RPM |
SRP021940_cerebellum | 0 .00 RPM | 5 .25 RPM |
SRP021940_embryo | 0 .38 RPM | 5 .57 RPM |
SRP021940_placental_villous | 0 .19 RPM | 5 .20 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 3 .13 RPM |
SRP021940_testis | 0 .00 RPM | 4 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003918 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000005212 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006797 | 2 retrocopies | |
Equus caballus | ENSECAG00000017121 | 1 retrocopy |
retro_ecab_782 ,
|
Erinaceus europaeus | ENSEEUG00000006169 | 2 retrocopies | |
Felis catus | ENSFCAG00000001527 | 1 retrocopy | |
Homo sapiens | ENSG00000197498 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001469 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005676 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021532 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038510 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012854 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016028 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016925 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018503 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000587 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017151 | 9 retrocopies |