RetrogeneDB ID: | retro_cfam_903 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:49896976..49897710(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPF2 | ||
Ensembl ID: | ENSCAFG00000003918 | ||
Aliases: | RPF2, BXDC1 | ||
Description: | ribosome production factor 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20870] |
Percent Identity: | 81.05 % |
Parental protein coverage: | 80.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MDALDRVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSMVTQVLRDVYALKKPYGVLYKKK-NIT |
MD.LD..VK.K.KR.KRFLEKREPKLSENIKNAML...GN.NSMVTQVL.DVYAL.KP.....K.K.NIT | |
Retrocopy | MDTLDEIVKAKMKRGKRFLEKREPKLSENIKNAMLMYRGNVNSMVTQVLKDVYALEKPM-LCIKRK<NIT |
Parental | RPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIEKFVSLKDVKNSKCPEGT |
RP.EDQTSLEFFSKKSD.SLF.FGSH.KKRPNNLVIG.MYDYHVLDMIELG.EKFVSL.D.KNSKCPEGT | |
Retrocopy | RPSEDQTSLEFFSKKSDHSLFVFGSH-KKRPNNLVIGHMYDYHVLDMIELGVEKFVSLEDIKNSKCPEGT |
Parental | KPMLIFAGDDFDVTEDYRRLKNLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKLLLKKSGCRT |
KPMLIFAGDDFDVTE.YRRLKNLLIDFFRGP.V.N..LAGLE.VLHFTALNGKIYF.S.K..L.KS.CRT | |
Retrocopy | KPMLIFAGDDFDVTEAYRRLKNLLIDFFRGPIVLNTHLAGLEHVLHFTALNGKIYF*SCKSVLRKSRCRT |
Parental | PRIELEEMGLSLDLVLRRTRLASDDLYKLSMKMPKALK |
PR.ELEE...SL.L.LRRT.LASDD.YKLSMKMPKALK | |
Retrocopy | PRTELEELRPSLGLILRRTHLASDDVYKLSMKMPKALK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 12 .43 RPM |
SRP017611_brain | 0 .00 RPM | 15 .24 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .73 RPM |
SRP017611_liver | 0 .00 RPM | 9 .28 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003918 | 2 retrocopies |
retro_cfam_1611, retro_cfam_903 ,
|
Callithrix jacchus | ENSCJAG00000005212 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006797 | 2 retrocopies | |
Equus caballus | ENSECAG00000017121 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006169 | 2 retrocopies | |
Felis catus | ENSFCAG00000001527 | 1 retrocopy | |
Homo sapiens | ENSG00000197498 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001469 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005676 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021532 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038510 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012854 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016028 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016925 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018503 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000587 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017151 | 9 retrocopies |