RetrogeneDB ID: | retro_ggor_83 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 20:33143055..33143862(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024187 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000197498 | ||
Ensembl ID: | ENSGGOG00000001469 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.81 % |
Parental protein coverage: | 87.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTLDRVVKPKTKRAKRFLEKKEPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKKKNITR |
.D.LDRVVKPK.KR.KRFLEK.EPKLNENIKNA.LIKGGNANATVT.VLKDV.ALKKPYGVLYKKKN.TR | |
Retrocopy | IDALDRVVKPKMKRVKRFLEKREPKLNENIKNAILIKGGNANATVTQVLKDVCALKKPYGVLYKKKNVTR |
Parental | PFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKSPQFPQVQK |
PFEDQTSLE..SKKSDCSLFMFGS.NKKRPNNLVIG.MYDYHVLDMIELGIENFVSLKDIK....P...K | |
Retrocopy | PFEDQTSLELLSKKSDCSLFMFGSYNKKRPNNLVIGHMYDYHVLDMIELGIENFVSLKDIKNSKCPEGTK |
Parental | PTSVFTSNDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKILIKRCFSCR |
....F...DDF.VTEDYRRLKSLL.DFFRGPTVSNI.LAGLEYVLHFTALNGKIYFR.YK.L.K....CR | |
Retrocopy | SMLIF-AGDDFNVTEDYRRLKSLLTDFFRGPTVSNICLAGLEYVLHFTALNGKIYFRRYKLLLKKS-GCR |
Parental | TEHWIFKNKQTALDLKGKKKIKGYRAIYTVSLE-GQALKPKKKKNISHDTFGTTYGRIHM |
T...........L.L............YT.S.....ALKPKKKKNIS.DTFGTTYGRIHM | |
Retrocopy | TPWIELEEIGPSLNLVLRRTHLAPDDLYTLSVKMPKALKPKKKKNISNDTFGTTYGRIHM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .10 RPM | 2 .25 RPM |
SRP007412_cerebellum | 0 .71 RPM | 2 .01 RPM |
SRP007412_heart | 0 .78 RPM | 0 .75 RPM |
SRP007412_kidney | 1 .47 RPM | 3 .88 RPM |
SRP007412_liver | 2 .35 RPM | 4 .06 RPM |
SRP007412_testis | 5 .91 RPM | 11 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2425 |
Pan troglodytes | retro_ptro_1398 |
Pongo abelii | retro_pabe_1788 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003918 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000005212 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006797 | 2 retrocopies | |
Equus caballus | ENSECAG00000017121 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006169 | 2 retrocopies | |
Felis catus | ENSFCAG00000001527 | 1 retrocopy | |
Homo sapiens | ENSG00000197498 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001469 | 1 retrocopy |
retro_ggor_83 ,
|
Myotis lucifugus | ENSMLUG00000005676 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021532 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038510 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012854 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016028 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016925 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018503 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000587 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017151 | 9 retrocopies |