RetrogeneDB ID: | retro_eeur_584 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_349024:50171..50692(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPF2 | ||
Ensembl ID: | ENSEEUG00000006169 | ||
Aliases: | None | ||
Description: | ribosome production factor 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20870] |
Percent Identity: | 95.51 % |
Parental protein coverage: | 58.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | NSKCPEGTKPMLIFAGDEFDVTEDYRRLKNLLIDFFRGPTVPNIRLAGLDYVLHFTALNGKIYFRSYKLL |
NSKCPEGTKPMLIFAGDEFDVTEDYRRLKNLLIDFFRGPTVPNIRLAGLDYVLHFTALNGKIYF.SYKLL | |
Retrocopy | NSKCPEGTKPMLIFAGDEFDVTEDYRRLKNLLIDFFRGPTVPNIRLAGLDYVLHFTALNGKIYFQSYKLL |
Parental | LKKSGCRTPRIELEEMGPSLDLVVRRTHLASDDLYKLSMKMPKALKPKKRKNISQDTFGT-TYGRIHMQK |
LKKSGCRTP.IELEEMGPSLDLVVRRTHLASDDLYKLSMKMPKALKPKKRKNISQDTFGT..YGRIHMQK | |
Retrocopy | LKKSGCRTPLIELEEMGPSLDLVVRRTHLASDDLYKLSMKMPKALKPKKRKNISQDTFGT>KYGRIHMQK |
Parental | QDLSKLQ-TRKMKGLKKR-PAERITEDQENKPKRIKNN |
QDLSKLQ.TRK..GLKKR.PAERITEDQENKPKRIKNN | |
Retrocopy | QDLSKLQ<TRK-*GLKKR<PAERITEDQENKPKRIKNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .35 RPM | 11 .12 RPM |
SRP017611_kidney | 3 .19 RPM | 14 .44 RPM |
SRP017611_liver | 2 .09 RPM | 6 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003918 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000005212 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006797 | 2 retrocopies | |
Equus caballus | ENSECAG00000017121 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006169 | 2 retrocopies |
retro_eeur_454, retro_eeur_584 ,
|
Felis catus | ENSFCAG00000001527 | 1 retrocopy | |
Homo sapiens | ENSG00000197498 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001469 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005676 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021532 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038510 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012854 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016028 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016925 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018503 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000587 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017151 | 9 retrocopies |