RetrogeneDB - Parental gene ENSCHOG00000007872 details

							
>ENSCHOG00000007872
ATGCAAATCAAGAGGCAAATCTTCGTGTTCACTTTAAGGAACACCCGAGAAACTGCTCAGGCCATCAAGGGTATGCATAT

TCGAAAAGCCACCAAGTATCTGAAAGATGTCACATTACAGAAGCAGTGTGTGCCATTCCGTCGTTACAACGGTGGTGTTG

GTAGATGTGCCCAGGCCAAACAGTGGGGCTGGACGCAGGGTCGATGGCCCAAAAAGAGTGCTGAATTTTTGTTACACATG

CTTAAAAATGCAGAAAGTAATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCACATCCAGGTGAACAA

AGCCCCCAAGATGCGCCGCCGGACTTACAGAGCTCATGGCCGGATTAACATACATGAGTTCCCCCTGCCACATTGA

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000009498	possible_ortholog	40 retrogenes	retro_amel_1147, retro_amel_1150, retro_amel_1252, retro_amel_1273, retro_amel_132, retro_amel_1422, retro_amel_1435, retro_amel_1487, retro_amel_1541, retro_amel_156, retro_amel_1567, retro_amel_1582, retro_amel_1599, retro_amel_1622, retro_amel_1624, retro_amel_1652, retro_amel_1703, retro_amel_1704, retro_amel_1743, retro_amel_1757, retro_amel_184, retro_amel_1908, retro_amel_1922, retro_amel_208, retro_amel_359, retro_amel_401, retro_amel_425, retro_amel_426, retro_amel_452, retro_amel_486, retro_amel_589, retro_amel_731, retro_amel_736, retro_amel_780, retro_amel_820, retro_amel_834, retro_amel_865, retro_amel_950, retro_amel_953, retro_amel_980,
Bos taurus	ENSBTAG00000022902	possible_ortholog	5 retrogenes	retro_btau_164, retro_btau_221, retro_btau_4, retro_btau_50, retro_btau_75,
Canis familiaris	ENSCAFG00000019044	possible_ortholog	7 retrogenes	retro_cfam_102, retro_cfam_171, retro_cfam_175, retro_cfam_189, retro_cfam_2, retro_cfam_239, retro_cfam_34,
Callithrix jacchus	ENSCJAG00000004779	possible_ortholog	4 retrogenes	retro_cjac_122, retro_cjac_248, retro_cjac_360, retro_cjac_376,
Cavia porcellus	ENSCPOG00000019337	possible_ortholog	31 retrogenes	retro_cpor_1004, retro_cpor_1005, retro_cpor_1015, retro_cpor_1050, retro_cpor_1083, retro_cpor_1118, retro_cpor_1125, retro_cpor_1227, retro_cpor_1271, retro_cpor_1305, retro_cpor_1413, retro_cpor_1455, retro_cpor_1539, retro_cpor_159, retro_cpor_213, retro_cpor_238, retro_cpor_272, retro_cpor_319, retro_cpor_374, retro_cpor_50, retro_cpor_521, retro_cpor_662, retro_cpor_675, retro_cpor_776, retro_cpor_784, retro_cpor_792, retro_cpor_827, retro_cpor_872, retro_cpor_924, retro_cpor_943, retro_cpor_955,
Echinops telfairi	ENSETEG00000011322	ortholog_one2one	10 retrogenes	retro_etel_1787, retro_etel_1810, retro_etel_1900, retro_etel_1936, retro_etel_1954, retro_etel_207, retro_etel_396, retro_etel_470, retro_etel_565, retro_etel_831,
Felis catus	ENSFCAG00000011342	possible_ortholog	43 retrogenes	retro_fcat_1002, retro_fcat_1004, retro_fcat_1019, retro_fcat_1050, retro_fcat_1065, retro_fcat_1196, retro_fcat_1235, retro_fcat_1300, retro_fcat_1322, retro_fcat_1426, retro_fcat_1427, retro_fcat_1432, retro_fcat_1516, retro_fcat_1525, retro_fcat_1539, retro_fcat_1552, retro_fcat_1588, retro_fcat_1655, retro_fcat_1692, retro_fcat_1699, retro_fcat_1703, retro_fcat_1740, retro_fcat_1746, retro_fcat_1821, retro_fcat_1864, retro_fcat_1892, retro_fcat_1917, retro_fcat_2023, retro_fcat_211, retro_fcat_264, retro_fcat_360, retro_fcat_461, retro_fcat_481, retro_fcat_488, retro_fcat_532, retro_fcat_607, retro_fcat_734, retro_fcat_791, retro_fcat_808, retro_fcat_855, retro_fcat_900, retro_fcat_917, retro_fcat_988,
Homo sapiens	ENSG00000265681	possible_ortholog	33 retrogenes	retro_hsap_1158, retro_hsap_1382, retro_hsap_1423, retro_hsap_1448, retro_hsap_1590, retro_hsap_172, retro_hsap_1728, retro_hsap_1751, retro_hsap_1783, retro_hsap_181, retro_hsap_1893, retro_hsap_1938, retro_hsap_202, retro_hsap_2149, retro_hsap_2398, retro_hsap_2457, retro_hsap_2491, retro_hsap_2582, retro_hsap_2786, retro_hsap_2905, retro_hsap_2933, retro_hsap_295, retro_hsap_3176, retro_hsap_3475, retro_hsap_356, retro_hsap_3620, retro_hsap_3798, retro_hsap_3932, retro_hsap_3943, retro_hsap_3967, retro_hsap_3988, retro_hsap_714, retro_hsap_735,
Gorilla gorilla	ENSGGOG00000026697	possible_ortholog	1 retrogene	retro_ggor_167,
Macropus eugenii	ENSMEUG00000016709	ortholog_one2one	26 retrogenes	retro_meug_1111, retro_meug_127, retro_meug_1285, retro_meug_1485, retro_meug_1821, retro_meug_188, retro_meug_1886, retro_meug_191, retro_meug_204, retro_meug_2159, retro_meug_2167, retro_meug_2183, retro_meug_257, retro_meug_326, retro_meug_355, retro_meug_373, retro_meug_410, retro_meug_413, retro_meug_509, retro_meug_58, retro_meug_703, retro_meug_738, retro_meug_740, retro_meug_779, retro_meug_81, retro_meug_934,
Microcebus murinus	ENSMICG00000017102	ortholog_one2one	14 retrogenes	retro_mmur_1046, retro_mmur_1047, retro_mmur_107, retro_mmur_1305, retro_mmur_1360, retro_mmur_1614, retro_mmur_195, retro_mmur_325, retro_mmur_335, retro_mmur_427, retro_mmur_484, retro_mmur_754, retro_mmur_817, retro_mmur_855,
Myotis lucifugus	ENSMLUG00000025554	possible_ortholog	22 retrogenes	retro_mluc_1141, retro_mluc_1224, retro_mluc_1300, retro_mluc_1375, retro_mluc_1468, retro_mluc_1500, retro_mluc_1547, retro_mluc_1579, retro_mluc_1739, retro_mluc_1755, retro_mluc_1822, retro_mluc_1870, retro_mluc_1959, retro_mluc_2018, retro_mluc_2027, retro_mluc_2036, retro_mluc_2059, retro_mluc_2165, retro_mluc_2198, retro_mluc_719, retro_mluc_835, retro_mluc_929,
Myotis lucifugus	ENSMLUG00000029264	possible_ortholog	36 retrogenes	retro_mluc_1043, retro_mluc_1060, retro_mluc_1061, retro_mluc_1081, retro_mluc_1094, retro_mluc_1163, retro_mluc_1193, retro_mluc_1206, retro_mluc_123, retro_mluc_1230, retro_mluc_1241, retro_mluc_1416, retro_mluc_157, retro_mluc_1581, retro_mluc_1652, retro_mluc_1677, retro_mluc_1693, retro_mluc_170, retro_mluc_1711, retro_mluc_1848, retro_mluc_1890, retro_mluc_2003, retro_mluc_2064, retro_mluc_2095, retro_mluc_2125, retro_mluc_2387, retro_mluc_2636, retro_mluc_2637, retro_mluc_661, retro_mluc_734, retro_mluc_763, retro_mluc_779, retro_mluc_785, retro_mluc_807, retro_mluc_938, retro_mluc_977,
Monodelphis domestica	ENSMODG00000003534	possible_ortholog	11 retrogenes	retro_mdom_1153, retro_mdom_1194, retro_mdom_1437, retro_mdom_1734, retro_mdom_1783, retro_mdom_1980, retro_mdom_321, retro_mdom_337, retro_mdom_491, retro_mdom_541, retro_mdom_91,
Mustela putorius furo	ENSMPUG00000000801	possible_ortholog	7 retrogenes	retro_mputfur_1008, retro_mputfur_126, retro_mputfur_1349, retro_mputfur_16, retro_mputfur_184, retro_mputfur_40, retro_mputfur_536,
Mus musculus	ENSMUSG00000062328	possible_ortholog	80 retrogenes	retro_mmus_1002, retro_mmus_1004, retro_mmus_1011, retro_mmus_1024, retro_mmus_1032, retro_mmus_1040, retro_mmus_1042, retro_mmus_1087, retro_mmus_1138, retro_mmus_1205, retro_mmus_1208, retro_mmus_1218, retro_mmus_1222, retro_mmus_1226, retro_mmus_1259, retro_mmus_1263, retro_mmus_1308, retro_mmus_1346, retro_mmus_1395, retro_mmus_1404, retro_mmus_1484, retro_mmus_1499, retro_mmus_1502, retro_mmus_1710, retro_mmus_1840, retro_mmus_1842, retro_mmus_1935, retro_mmus_201, retro_mmus_2016, retro_mmus_2034, retro_mmus_2076, retro_mmus_2099, retro_mmus_2124, retro_mmus_2156, retro_mmus_2203, retro_mmus_2261, retro_mmus_2262, retro_mmus_2343, retro_mmus_2345, retro_mmus_243, retro_mmus_2468, retro_mmus_2550, retro_mmus_2613, retro_mmus_2634, retro_mmus_2724, retro_mmus_2759, retro_mmus_2773, retro_mmus_2775, retro_mmus_288, retro_mmus_2919, retro_mmus_3003, retro_mmus_302, retro_mmus_3037, retro_mmus_3049, retro_mmus_310, retro_mmus_311, retro_mmus_314, retro_mmus_327, retro_mmus_334, retro_mmus_3354, retro_mmus_337, retro_mmus_3490, retro_mmus_3601, retro_mmus_3687, retro_mmus_388, retro_mmus_419, retro_mmus_420, retro_mmus_523, retro_mmus_525, retro_mmus_529, retro_mmus_661, retro_mmus_673, retro_mmus_741, retro_mmus_773, retro_mmus_828, retro_mmus_871, retro_mmus_879, retro_mmus_922, retro_mmus_948, retro_mmus_966,
Oryctolagus cuniculus	ENSOCUG00000012485	possible_ortholog	2 retrogenes	retro_ocun_1433, retro_ocun_231,
Procavia capensis	ENSPCAG00000003103	ortholog_one2one	8 retrogenes	retro_pcap_193, retro_pcap_196, retro_pcap_197, retro_pcap_200, retro_pcap_206, retro_pcap_250, retro_pcap_363, retro_pcap_52,
Pongo abelii	ENSPPYG00000009151	ortholog_one2one	43 retrogenes	retro_pabe_1177, retro_pabe_1178, retro_pabe_1179, retro_pabe_1197, retro_pabe_1373, retro_pabe_1408, retro_pabe_1448, retro_pabe_1464, retro_pabe_1531, retro_pabe_1565, retro_pabe_1574, retro_pabe_1725, retro_pabe_1807, retro_pabe_1832, retro_pabe_1902, retro_pabe_2052, retro_pabe_2053, retro_pabe_2088, retro_pabe_2102, retro_pabe_2164, retro_pabe_2231, retro_pabe_2317, retro_pabe_2520, retro_pabe_2635, retro_pabe_2638, retro_pabe_2871, retro_pabe_2917, retro_pabe_2921, retro_pabe_2971, retro_pabe_3020, retro_pabe_3029, retro_pabe_3103, retro_pabe_3187, retro_pabe_3248, retro_pabe_3253, retro_pabe_3262, retro_pabe_3277, retro_pabe_347, retro_pabe_3493, retro_pabe_539, retro_pabe_567, retro_pabe_617, retro_pabe_882,
Pteropus vampyrus	ENSPVAG00000001969	ortholog_one2one	76 retrogenes	retro_pvam_1003, retro_pvam_1005, retro_pvam_1020, retro_pvam_1036, retro_pvam_1037, retro_pvam_104, retro_pvam_1042, retro_pvam_1085, retro_pvam_1093, retro_pvam_1105, retro_pvam_1155, retro_pvam_1162, retro_pvam_1186, retro_pvam_1194, retro_pvam_1204, retro_pvam_1218, retro_pvam_1279, retro_pvam_1336, retro_pvam_1338, retro_pvam_1351, retro_pvam_1366, retro_pvam_1372, retro_pvam_138, retro_pvam_1392, retro_pvam_1397, retro_pvam_1407, retro_pvam_1409, retro_pvam_142, retro_pvam_143, retro_pvam_1452, retro_pvam_1454, retro_pvam_182, retro_pvam_206, retro_pvam_220, retro_pvam_263, retro_pvam_268, retro_pvam_278, retro_pvam_292, retro_pvam_309, retro_pvam_339, retro_pvam_348, retro_pvam_395, retro_pvam_40, retro_pvam_402, retro_pvam_417, retro_pvam_424, retro_pvam_439, retro_pvam_442, retro_pvam_455, retro_pvam_464, retro_pvam_497, retro_pvam_520, retro_pvam_55, retro_pvam_571, retro_pvam_577, retro_pvam_584, retro_pvam_588, retro_pvam_596, retro_pvam_604, retro_pvam_608, retro_pvam_654, retro_pvam_659, retro_pvam_684, retro_pvam_700, retro_pvam_701, retro_pvam_705, retro_pvam_712, retro_pvam_716, retro_pvam_726, retro_pvam_751, retro_pvam_756, retro_pvam_777, retro_pvam_862, retro_pvam_88, retro_pvam_925, retro_pvam_966,
Rattus norvegicus	ENSRNOG00000018680	possible_ortholog	48 retrogenes	retro_rnor_1028, retro_rnor_1146, retro_rnor_1256, retro_rnor_1281, retro_rnor_1297, retro_rnor_1419, retro_rnor_1469, retro_rnor_1470, retro_rnor_1495, retro_rnor_1504, retro_rnor_1533, retro_rnor_1587, retro_rnor_1603, retro_rnor_1629, retro_rnor_1678, retro_rnor_1856, retro_rnor_1900, retro_rnor_1902, retro_rnor_1911, retro_rnor_1912, retro_rnor_1942, retro_rnor_1980, retro_rnor_2011, retro_rnor_218, retro_rnor_2243, retro_rnor_2348, retro_rnor_242, retro_rnor_2519, retro_rnor_2570, retro_rnor_2572, retro_rnor_2634, retro_rnor_2796, retro_rnor_419, retro_rnor_441, retro_rnor_554, retro_rnor_613, retro_rnor_667, retro_rnor_738, retro_rnor_762, retro_rnor_774, retro_rnor_803, retro_rnor_815, retro_rnor_837, retro_rnor_877, retro_rnor_932, retro_rnor_934, retro_rnor_972, retro_rnor_982,
Tarsius syrichta	ENSTSYG00000007402	ortholog_one2one	20 retrogenes	retro_tsyr_1042, retro_tsyr_1298, retro_tsyr_1349, retro_tsyr_1416, retro_tsyr_1555, retro_tsyr_159, retro_tsyr_180, retro_tsyr_1801, retro_tsyr_1940, retro_tsyr_2021, retro_tsyr_2053, retro_tsyr_2088, retro_tsyr_253, retro_tsyr_304, retro_tsyr_693, retro_tsyr_752, retro_tsyr_77, retro_tsyr_819, retro_tsyr_860, retro_tsyr_868,
Tursiops truncatus	ENSTTRG00000005797	ortholog_one2one	31 retrogenes	retro_ttru_1153, retro_ttru_1338, retro_ttru_1374, retro_ttru_1436, retro_ttru_1509, retro_ttru_1716, retro_ttru_1757, retro_ttru_178, retro_ttru_1784, retro_ttru_1811, retro_ttru_1854, retro_ttru_1856, retro_ttru_193, retro_ttru_1932, retro_ttru_232, retro_ttru_264, retro_ttru_299, retro_ttru_447, retro_ttru_49, retro_ttru_568, retro_ttru_609, retro_ttru_627, retro_ttru_636, retro_ttru_660, retro_ttru_691, retro_ttru_703, retro_ttru_747, retro_ttru_800, retro_ttru_836, retro_ttru_884, retro_ttru_992,
Vicugna pacos	ENSVPAG00000009568	ortholog_one2one	1 retrogene	retro_vpac_10,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_chof_65	97.50	90.08	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_chof_107	81.93	62.60	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_chof_130	78.75	61.07	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_chof_137	74.07	80.92	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_chof_153	76.64	80.15	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_chof_187	86.51	93.89	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_chof_204	91.82	83.97	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_chof_221	82.35	90.08	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_chof_246	82.08	79.39	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_chof_463	94.92	89.31	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_chof_507	66.92	95.42	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_chof_564	86.55	90.08	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_chof_690	88.19	96.18	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_chof_716	71.09	96.18	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_chof_759	81.25	84.73	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_chof_775	89.08	90.08	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_chof_798	80.00	90.08	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_chof_875	88.24	90.08	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_chof_899	79.61	76.34	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_chof_945	87.50	90.08	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_chof_953	81.90	80.15	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_chof_1020	62.26	79.39	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_chof_1021	86.55	90.08	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_chof_1232	88.33	90.08	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_chof_1405	84.25	95.42	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_chof_1432	80.33	91.60	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_chof_1448	75.61	61.07	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_chof_1453	83.90	89.31	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_chof_1471	81.15	91.60	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_chof_1475	85.12	90.08	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_chof_1634	79.84	93.89	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_chof_1671	87.39	90.08	Please wait, loading	Please wait, loading	Please wait, loading
33.	retro_chof_1678	80.99	90.08	Please wait, loading	Please wait, loading	Please wait, loading
34.	retro_chof_1754	84.30	91.60	Please wait, loading	Please wait, loading	Please wait, loading
35.	retro_chof_1786	96.88	72.52	Please wait, loading	Please wait, loading	Please wait, loading
36.	retro_chof_1871	52.86	52.67	Please wait, loading	Please wait, loading	Please wait, loading
37.	retro_chof_1895	73.33	78.63	Please wait, loading	Please wait, loading	Please wait, loading
38.	retro_chof_1901	85.04	96.18	Please wait, loading	Please wait, loading	Please wait, loading
39.	retro_chof_1908	81.82	58.78	Please wait, loading	Please wait, loading	Please wait, loading
40.	retro_chof_2038	82.50	90.08	Please wait, loading	Please wait, loading	Please wait, loading
41.	retro_chof_2133	69.39	73.28	Please wait, loading	Please wait, loading	Please wait, loading
42.	retro_chof_2140	75.97	95.42	Please wait, loading	Please wait, loading	Please wait, loading
43.	retro_chof_2243	80.67	90.08	Please wait, loading	Please wait, loading	Please wait, loading
44.	retro_chof_2415	60.19	78.63	Please wait, loading	Please wait, loading	Please wait, loading
45.	retro_chof_2458	76.86	90.08	Please wait, loading	Please wait, loading	Please wait, loading
46.	retro_chof_2489	93.28	90.08	Please wait, loading	Please wait, loading	Please wait, loading
47.	retro_chof_2534	71.90	88.55	Please wait, loading	Please wait, loading	Please wait, loading
48.	retro_chof_2570	89.08	90.08	Please wait, loading	Please wait, loading	Please wait, loading
49.	retro_chof_2610	86.67	90.08	Please wait, loading	Please wait, loading	Please wait, loading
50.	retro_chof_2640	80.33	91.60	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCHOG00000007872 retrocopies

Parental gene:	RPL17-C18orf32, ENSCHOG00000007872
Aliases:	None
Description:	RPL17-C18orf32 readthrough [Source:HGNC Symbol;Acc:44661]
Organism:	*Sloth (Choloepus hoffmanni)*
Coordinates:	scaffold_32806:6470..8529(+)

Parental gene:

RPL17-C18orf32, ENSCHOG00000007872