Parental gene:

RPL17-C18orf32, ENSTSYG00000007402

Aliases:None
Description:RPL17-C18orf32 readthrough [Source:HGNC Symbol;Acc:44661]
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_8506:1515..7365(-)


>ENSTSYG00000007402
CTGCAAGTCCCGAGGCCAACCTGCGCGTTCACTTCAAGGAACACCCGAGAAACTGCGCAGGCCATCAAGGGCATGCACAT
ACGAAAAGCCACCAAGTACCTGAAAGACGTCACCTTACAGAAACAGTGTGTGCCATTCCGCCGCTACAACGGTGGAGTTG
GAAGGTGTGCCCAGGCCAAACAGTGGGGCTGGACACAGGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATG
CTTAAAAATGCAGAGAGTAATGCTGAGCTTAAGGGCTTAGATGTTGATTCTCTGGTCATTGAGCATATCCAGGTGAACAA
AGCCCCTAAGATGCGCCGCCGGACGTACCGGGCTCATGGTCGGATCAACTTACATGAGCTCCCCCTGCCACATTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
Bos taurus ENSBTAG00000022902 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 ortholog_one2one 50 retrogenes
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000019337 possible_ortholog 31 retrogenes
Echinops telfairi ENSETEG00000011322 ortholog_one2one 10 retrogenes
Felis catus ENSFCAG00000011342 possible_ortholog 43 retrogenes
Homo sapiens ENSG00000265681 possible_ortholog 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000016709 ortholog_one2one 26 retrogenes
Microcebus murinus ENSMICG00000017102 ortholog_one2one 14 retrogenes
Myotis lucifugus ENSMLUG00000025554 possible_ortholog 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 possible_ortholog 36 retrogenes
Monodelphis domestica ENSMODG00000003534 possible_ortholog 11 retrogenes
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
Mus musculus ENSMUSG00000062328 possible_ortholog 80 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000003103 ortholog_one2one 8 retrogenes
Pongo abelii ENSPPYG00000009151 ortholog_one2one 43 retrogenes
Pteropus vampyrus ENSPVAG00000001969 ortholog_one2one 76 retrogenes
Rattus norvegicus ENSRNOG00000018680 possible_ortholog 48 retrogenes
Tursiops truncatus ENSTTRG00000005797 ortholog_one2one 31 retrogenes
Vicugna pacos ENSVPAG00000009568 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_77 70.49 91.60
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2. retro_tsyr_159 80.47 96.18
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3. retro_tsyr_180 64.17 90.84
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4. retro_tsyr_253 60.22 68.70
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5. retro_tsyr_304 80.68 65.65
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6. retro_tsyr_693 55.65 92.37
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7. retro_tsyr_752 94.87 89.31
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8. retro_tsyr_819 64.84 96.18
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9. retro_tsyr_860 64.80 94.66
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10. retro_tsyr_868 78.30 78.63
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11. retro_tsyr_1042 67.19 96.18
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12. retro_tsyr_1298 81.98 83.97
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13. retro_tsyr_1349 64.80 93.89
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14. retro_tsyr_1416 60.91 83.21
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15. retro_tsyr_1555 72.09 64.12
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16. retro_tsyr_1801 64.23 93.13
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17. retro_tsyr_1940 60.75 81.68
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18. retro_tsyr_2021 64.62 96.18
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19. retro_tsyr_2053 86.54 78.63
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20. retro_tsyr_2088 77.88 78.63
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Download FASTA sequences of all ENSTSYG00000007402 retrocopies