RetrogeneDB ID:

retro_pvam_1366

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_7117:18238..18502(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL17-C18orf32
Ensembl ID:ENSPVAG00000001969
Aliases:None
Description:RPL17-C18orf32 readthrough [Source:HGNC Symbol;Acc:44661]


Retrocopy-Parental alignment summary:






>retro_pvam_1366
GTGCCATTCCATCATTATAATCGTGGAGTTGGTAGGTGTGCCCAGGTCAAACAATGGGGCTGGACACAGGGTCAGTGGCC
TAAAAAGAGTGCTAAATTTTTGCTGCACATGCTTAAAAATACGGAGAGTAATGCTGAACTTAAGGGTCTAGATGTAGACT
CCCTGGTCATTGAGCACATGCAAGTGAACAAAGCTCCCAGGATGCAACGCAGAACTCACAGATCTCATGGGCAACTTAAC
CCCTACCTGAACTCTTCCTGCCAC

ORF - retro_pvam_1366 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.41 %
Parental protein coverage: 67.18 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRR
VPF..YN.GVGRCAQ.KQWGWTQG.WPKKSA.FLLHMLKN.ESNAELKGLDVDSLVIEH.QVNKAP.M.R
RetrocopyVPFHHYNRGVGRCAQVKQWGWTQGQWPKKSAKFLLHMLKNTESNAELKGLDVDSLVIEHMQVNKAPRMQR
ParentalRTYRAHGRINLYELSLPH
RT.R.HG..N.Y..S..H
RetrocopyRTHRSHGQLNPYLNSSCH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_1366 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 25 parental genes, and 649 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000000949840 retrocopies
Bos taurus ENSBTAG000000229025 retrocopies
Canis familiaris ENSCAFG000000190447 retrocopies
Choloepus hoffmanni ENSCHOG0000000787250 retrocopies
Callithrix jacchus ENSCJAG000000047794 retrocopies
Cavia porcellus ENSCPOG0000001933731 retrocopies
Echinops telfairi ENSETEG0000001132210 retrocopies
Felis catus ENSFCAG0000001134243 retrocopies
Homo sapiens ENSG0000026568133 retrocopies
Gorilla gorilla ENSGGOG000000266971 retrocopy
Macropus eugenii ENSMEUG0000001670926 retrocopies
Microcebus murinus ENSMICG0000001710214 retrocopies
Myotis lucifugus ENSMLUG0000002555422 retrocopies
Myotis lucifugus ENSMLUG0000002926436 retrocopies
Monodelphis domestica ENSMODG0000000353411 retrocopies
Mustela putorius furoENSMPUG000000008017 retrocopies
Mus musculus ENSMUSG0000006232880 retrocopies
Oryctolagus cuniculus ENSOCUG000000124852 retrocopies
Procavia capensis ENSPCAG000000031038 retrocopies
Pongo abelii ENSPPYG0000000915143 retrocopies
Pteropus vampyrus ENSPVAG00000001969 76 retrocopies
Rattus norvegicus ENSRNOG0000001868048 retrocopies
Tarsius syrichta ENSTSYG0000000740220 retrocopies
Tursiops truncatus ENSTTRG0000000579731 retrocopies
Vicugna pacos ENSVPAG000000095681 retrocopy



Copyright © RetrogeneDB 2014-2017