Parental gene: | ENSCPOG00000002251 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_0:72938248..73022032(-) |
>ENSCPOG00000002251
ATGTCGGATGACGATTCGAGGGCAAGCACCAGCTCCTCCTCATCTTCGTCCTCCAACCAGCAAACCGAGAAAGAAACAAA
CACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAACTCCAAGCTCCTCTCCACCAGCGCCAAGAGGATTCAGA
AGGAGCTGGCAGACATCACTCTAGACCCTCCGCCTAACTGCAGTGCGGGTCCCAAAGGTGACAACATCTATGAGTGGAGA
TCTACCATTCTAGGACCTCCAGGATCTGTGTATGAAGGTGGTGTATTCTTCCTAGATATCACTTTTACTCCAGAATACCC
CTTCAAACCTCCAAAGGTTACATTTCGGACAAGAATCTATCACTGTAACATTAACAGTCAAGGAGTTATTTGCTTGGATA
TATTGAAAGATAATTGGAGTCCAGCACTAACTATTTCTAAAGTCCTCCTTTCTATCTGCTCACTTCTTACAGACTGTAAT
CCTGCTGACCCTTTGGTGGGAAGTATTGCCACTCAGTATATGACCAACAGAGCAGAACATGACAGAATGGCCAGACAGTG
GACCAAGAGATACGCTACA
ATGTCGGATGACGATTCGAGGGCAAGCACCAGCTCCTCCTCATCTTCGTCCTCCAACCAGCAAACCGAGAAAGAAACAAA
CACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAACTCCAAGCTCCTCTCCACCAGCGCCAAGAGGATTCAGA
AGGAGCTGGCAGACATCACTCTAGACCCTCCGCCTAACTGCAGTGCGGGTCCCAAAGGTGACAACATCTATGAGTGGAGA
TCTACCATTCTAGGACCTCCAGGATCTGTGTATGAAGGTGGTGTATTCTTCCTAGATATCACTTTTACTCCAGAATACCC
CTTCAAACCTCCAAAGGTTACATTTCGGACAAGAATCTATCACTGTAACATTAACAGTCAAGGAGTTATTTGCTTGGATA
TATTGAAAGATAATTGGAGTCCAGCACTAACTATTTCTAAAGTCCTCCTTTCTATCTGCTCACTTCTTACAGACTGTAAT
CCTGCTGACCCTTTGGTGGGAAGTATTGCCACTCAGTATATGACCAACAGAGCAGAACATGACAGAATGGCCAGACAGTG
GACCAAGAGATACGCTACA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 7 .14 RPM |
| SRP017611_kidney | 11 .93 RPM |
| SRP017611_brain | 15 .87 RPM |
| SRP040447_lung | 23 .88 RPM |
| SRP040447_skeletal_muscle | 14 .63 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003515 | ortholog_one2many | 2 retrogenes | |
| Ciona intestinalis | ENSCING00000006860 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006044 | other_paralog | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000015441 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000024719 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000008393 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000004150 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000014517 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000021774 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006026 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007527 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000014693 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000001773 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008794 | ortholog_one2many | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000001416 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000025799 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_52 | 92.02 | 97.41 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1036 | 83.08 | 66.84 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000002251 retrocopies