RetrogeneDB ID: | retro_mmus_537 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:25836680..25837252(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2e1 | ||
Ensembl ID: | ENSMUSG00000021774 | ||
Aliases: | Ube2e1, UbcM3, Ubce5, ubcM2 | ||
Description: | ubiquitin-conjugating enzyme E2E 1 [Source:MGI Symbol;Acc:MGI:107411] |
Percent Identity: | 85.42 % |
Parental protein coverage: | 98.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DDDSRASTSSSSSSSSNQQTEKEGSTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAG-P |
D....ASTSS.SS..SNQQ..KEG.TPKKKESKVSMS.NSKLLS.S.KRIQKELA.ITLD.PPNCS.G.P | |
Retrocopy | DTKRGASTSSLSSLTSNQQPKKEGNTPKKKESKVSMSRNSKLLSPSTKRIQKELAGITLDSPPNCSTG<P |
Parental | KGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP |
.GDNIYEWRS..LGPPG.VYEGG.FFLDITFTPEYPFKPPKVT.RTRIYHCNINSQGVICLDIL.DNWSP | |
Retrocopy | QGDNIYEWRSSTLGPPGFVYEGGGFFLDITFTPEYPFKPPKVTSRTRIYHCNINSQGVICLDILRDNWSP |
Parental | ALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT |
ALTI.KVLLSICSLLTDCNPADPLVGSI.TQYMTNRAEHDRMAR..TKRYAT | |
Retrocopy | ALTILKVLLSICSLLTDCNPADPLVGSIDTQYMTNRAEHDRMARRQTKRYAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 25 .37 RPM |
SRP007412_cerebellum | 0 .04 RPM | 30 .70 RPM |
SRP007412_heart | 0 .00 RPM | 12 .20 RPM |
SRP007412_kidney | 0 .02 RPM | 26 .53 RPM |
SRP007412_liver | 0 .08 RPM | 16 .60 RPM |
SRP007412_testis | 0 .09 RPM | 11 .75 RPM |