RetrogeneDB ID: | retro_mmus_2493 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:105374456..105374960(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081819 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2e1 | ||
Ensembl ID: | ENSMUSG00000021774 | ||
Aliases: | Ube2e1, UbcM3, Ubce5, ubcM2 | ||
Description: | ubiquitin-conjugating enzyme E2E 1 [Source:MGI Symbol;Acc:MGI:107411] |
Percent Identity: | 89.88 % |
Parental protein coverage: | 87.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GSTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGV |
G....KKESKVSMSKNSKLLSTS.KRIQK..A.ITLDP.PNCS.GPKGDNIYEWRSTILGPPGSV.EGG. | |
Retrocopy | GFAMSKKESKVSMSKNSKLLSTSTKRIQKQRAGITLDPLPNCSVGPKGDNIYEWRSTILGPPGSVCEGGG |
Parental | FFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL |
FFLDITFTPEYPFKPPKVTFRTR.YHCNIN.QGVICLDILKDNWSPALTISKVLLSICSL.TDCNPADPL | |
Retrocopy | FFLDITFTPEYPFKPPKVTFRTRMYHCNINIQGVICLDILKDNWSPALTISKVLLSICSLFTDCNPADPL |
Parental | VGSIATQYMTNRAEHDRMARQWTKRYAT |
VGSIATQYMTNRAEHDRMARQ.T.RYAT | |
Retrocopy | VGSIATQYMTNRAEHDRMARQRTQRYAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 25 .37 RPM |
SRP007412_cerebellum | 0 .04 RPM | 30 .70 RPM |
SRP007412_heart | 0 .03 RPM | 12 .20 RPM |
SRP007412_kidney | 0 .04 RPM | 26 .53 RPM |
SRP007412_liver | 0 .00 RPM | 16 .60 RPM |
SRP007412_testis | 0 .00 RPM | 11 .75 RPM |