RetrogeneDB ID: retro_meug_2089

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold88857:12421..12758(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000001344
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UBE2E1
• Ensembl ID: ENSMEUG00000014517
• Aliases: None
• Description: ubiquitin-conjugating enzyme E2E 1 [Source:HGNC Symbol;Acc:12477]

Sequence

>retro_meug_2089
GAATGGATCAACTCCCCCATGAGGCCTCCAGGATCGGTCTGTGAGGGGGTGCGTTTGCTTCCTTGACATAACCTTTACAC
CAAAATATCTCCTCAAGCCTCCAAAGCTTACATTCCAGACAAGAACTTATTACTATAACATCAGTAACCAAGGAGTAATC
CATTTGGATACTGTGAAGAACCACTGGAGCTCCGCCCTCACCATATCTAAAGCGCTCCTTTCCATCTGCTCCCTGCTCAC
AGACTGCAGCCCTGCAGACCCCTTAGTGGGAAGTACATGAGCAACAGAGCAGATAGAGCAAGACAGAATGGCCAGGCAGG
GGACCAAGAGATATGCT

Alignment

ORF - retro_meug_2089 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.79 %
• Parental protein coverage: 80.99 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EWRSTILGPPGSVYEGG-VFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTIS
          EW......PPGSV.EG..V.FLDITFTP.Y..KPPK.TF.TR.Y..NI..QGVI.LD..K..WS.ALTIS
Retrocopy EWINSPMRPPGSVCEGV>VCFLDITFTPKYLLKPPKLTFQTRTYYYNISNQGVIHLDTVKNHWSSALTIS

Parental  KVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA
          K.LLSICSLLTDC.PADPL.........T...E.DRMARQ.TKRYA
Retrocopy KALLSICSLLTDCSPADPL---VGST*ATEQIEQDRMARQGTKRYA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2089 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2089 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 18 parental genes, and 33 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003515	2 retrocopies	retro_amel_1117, retro_amel_483,
Ciona intestinalis	ENSCING00000006860	1 retrocopy	retro_cint_33,
Cavia porcellus	ENSCPOG00000002251	2 retrocopies	retro_cpor_1036, retro_cpor_52,
Dipodomys ordii	ENSDORG00000015441	1 retrocopy	retro_dord_785,
Felis catus	ENSFCAG00000024719	1 retrocopy	retro_fcat_623,
Gorilla gorilla	ENSGGOG00000008393	1 retrocopy	retro_ggor_76,
Loxodonta africana	ENSLAFG00000004150	1 retrocopy	retro_lafr_320,
Macropus eugenii	ENSMEUG00000004256	6 retrocopies	retro_meug_1034, retro_meug_1503, retro_meug_2138, retro_meug_564, retro_meug_787, retro_meug_89,
Macropus eugenii	ENSMEUG00000007238	1 retrocopy	retro_meug_1090,
Macropus eugenii	ENSMEUG00000014517	1 retrocopy	retro_meug_2089 ,
Mus musculus	ENSMUSG00000021774	3 retrocopies	retro_mmus_2493, retro_mmus_2600, retro_mmus_537,
Oryctolagus cuniculus	ENSOCUG00000006026	2 retrocopies	retro_ocun_134, retro_ocun_243,
Otolemur garnettii	ENSOGAG00000007527	3 retrocopies	retro_ogar_2029, retro_ogar_2566, retro_ogar_626,
Pan troglodytes	ENSPTRG00000014693	1 retrocopy	retro_ptro_68,
Pteropus vampyrus	ENSPVAG00000001773	1 retrocopy	retro_pvam_1451,
Rattus norvegicus	ENSRNOG00000008794	3 retrocopies	retro_rnor_1632, retro_rnor_2291, retro_rnor_2343,
Sarcophilus harrisii	ENSSHAG00000001416	1 retrocopy	retro_shar_712,
Ictidomys tridecemlineatus	ENSSTOG00000025799	2 retrocopies	retro_itri_1371, retro_itri_645,