Parental gene:

RPS27A, ENSDNOG00000004813

Aliases:None
Description:ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3839:181..1838(+)


>ENSDNOG00000004813
GTTGAACCTTCGGATACAATAGAAAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACT
GATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTG
TGTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTATACTACTCCCAAGAAGAATAAGCATAAGAGAAAG
AAGGTTAAGCTGGCTGTCTTGAAGTATTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTAGGGAGTGCCCTTC
AGATGAATGTGGTGCTGGAGTTTTTATGGCCAGCCACTTCGACAGACATTACTGTGGCAAGTGTTGTCTGACTTACTGCT
TCAACAAACCAGAAGACAAGTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 237 .06 RPM
SRP012922_cerebellum 193 .69 RPM
SRP012922_heart 170 .78 RPM
SRP012922_kidney 578 .26 RPM
SRP012922_liver 126 .32 RPM
SRP012922_lung 407 .77 RPM
SRP012922_quadricep_muscle 192 .47 RPM
SRP012922_spleen 444 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004017 possible_ortholog 5 retrogenes
retro_amel_1565, retro_amel_175, retro_amel_598, retro_amel_661, retro_amel_844,
Canis familiaris ENSCAFG00000023471 possible_ortholog 3 retrogenes
retro_cfam_1048, retro_cfam_640, retro_cfam_81,
Callithrix jacchus ENSCJAG00000010052 possible_ortholog 5 retrogenes
retro_cjac_200, retro_cjac_229, retro_cjac_344, retro_cjac_74, retro_cjac_88,
Cavia porcellus ENSCPOG00000005819 possible_ortholog 7 retrogenes
retro_cpor_1040, retro_cpor_1433, retro_cpor_406, retro_cpor_409, retro_cpor_502, retro_cpor_591, retro_cpor_990,
Erinaceus europaeus ENSEEUG00000002329 ortholog_one2one 9 retrogenes
retro_eeur_127, retro_eeur_143, retro_eeur_193, retro_eeur_283, retro_eeur_289, retro_eeur_308, retro_eeur_58, retro_eeur_629, retro_eeur_72,
Gorilla gorilla ENSGGOG00000007678 possible_ortholog 9 retrogenes
retro_ggor_1290, retro_ggor_1291, retro_ggor_1502, retro_ggor_1749, retro_ggor_179, retro_ggor_203, retro_ggor_2373, retro_ggor_2858, retro_ggor_2885,
Loxodonta africana ENSLAFG00000023133 ortholog_one2one 2 retrogenes
retro_lafr_1122, retro_lafr_185,
Myotis lucifugus ENSMLUG00000017064 possible_ortholog 10 retrogenes
retro_mluc_1201, retro_mluc_1255, retro_mluc_1298, retro_mluc_1646, retro_mluc_1730, retro_mluc_1865, retro_mluc_1867, retro_mluc_2264, retro_mluc_37, retro_mluc_380,
Myotis lucifugus ENSMLUG00000029449 possible_ortholog 1 retrogene
retro_mluc_1585,
Macaca mulatta ENSMMUG00000015563 possible_ortholog 8 retrogenes
retro_mmul_1198, retro_mmul_193, retro_mmul_2189, retro_mmul_222, retro_mmul_2470, retro_mmul_282, retro_mmul_606, retro_mmul_73,
Monodelphis domestica ENSMODG00000001819 possible_ortholog 3 retrogenes
retro_mdom_1367, retro_mdom_1751, retro_mdom_205,
Oryctolagus cuniculus ENSOCUG00000003613 possible_ortholog 10 retrogenes
retro_ocun_1087, retro_ocun_1163, retro_ocun_1209, retro_ocun_1259, retro_ocun_1268, retro_ocun_1339, retro_ocun_164, retro_ocun_288, retro_ocun_381, retro_ocun_851,
Pongo abelii ENSPPYG00000025871 possible_ortholog 1 retrogene
retro_pabe_117,
Pan troglodytes ENSPTRG00000011928 possible_ortholog 1 retrogene
retro_ptro_32,
Rattus norvegicus ENSRNOG00000004426 possible_ortholog 2 retrogenes
retro_rnor_117, retro_rnor_161,
Ictidomys tridecemlineatus ENSSTOG00000009566 possible_ortholog 5 retrogenes
retro_itri_1583, retro_itri_1765, retro_itri_26, retro_itri_635, retro_itri_962,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_131 87.50 78.57
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2. retro_dnov_491 83.10 100.00
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3. retro_dnov_538 80.56 76.43
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4. retro_dnov_771 88.65 100.00
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5. retro_dnov_1340 90.71 100.00
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6. retro_dnov_1432 87.97 93.57
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7. retro_dnov_1558 80.41 68.57
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8. retro_dnov_1664 94.33 100.00
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9. retro_dnov_2022 66.96 77.86
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10. retro_dnov_2183 87.96 77.14
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11. retro_dnov_2576 69.93 99.29
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12. retro_dnov_2635 88.73 99.29
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Download FASTA sequences of all ENSDNOG00000004813 retrocopies