RetrogeneDB ID: | retro_eeur_308 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_250154:1145..1317(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSEEUG00000002329 | ||
Aliases: | None | ||
Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
Percent Identity: | 72.41 % |
Parental protein coverage: | 54.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENV-KAKIQDKG-IPPDQQRLIFAGKQLEDGRTLS |
MQIF.KTL.GK.I.LEVEPSDT.EN..K.KIQDK..IPP..Q.LIF.GKQLEDG.TL. | |
Retrocopy | MQIFGKTLPGKAIMLEVEPSDTVENL>KTKIQDKEIIPPEEQKLIFMGKQLEDGHTLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 59 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 112 .71 RPM |
SRP017611_liver | 0 .00 RPM | 82 .64 RPM |