RetrogeneDB ID: | retro_cpor_502 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_17:32913618..32914031(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBIZ | ||
Ensembl ID: | ENSCPOG00000005819 | ||
Aliases: | None | ||
Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62978] |
Percent Identity: | 68.28 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKK |
..L..E..DT.ENVKAK.QDKEGIPPD.....FAGK.LE.G.TLS.Y.IQ.ESTLHL.LRL.GG.KKRKK | |
Retrocopy | LILKTELLDTVENVKAKNQDKEGIPPDRKA*FFAGKPLEYGHTLS-YDIQNESTLHLMLRLCGGIKKRKK |
Parental | KSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFM-ASHFDRHYCGKCCLTYCFN |
...TT.KKNKHKRK..KLAVLKYYKV..NG.I.R...EC.S..C.AG.FM.AS...RHYCG.CCLTYCFN | |
Retrocopy | -C*TTLKKNKHKRKRIKLAVLKYYKVNKNGEIHR---ECLSNKC-AGIFM<ASYCERHYCGMCCLTYCFN |
Parental | KPEDK |
KPED. | |
Retrocopy | KPEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 139 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 181 .95 RPM |
SRP017611_liver | 0 .00 RPM | 119 .39 RPM |
SRP040447_lung | 0 .08 RPM | 178 .79 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 156 .32 RPM |