RetrogeneDB ID: | retro_cpor_591 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_2:5667106..5667567(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBIZ | ||
Ensembl ID: | ENSCPOG00000005819 | ||
Aliases: | None | ||
Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62978] |
Percent Identity: | 72.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL |
.QIF.KTL..GKTITLE.EP.DTIENVKAK.QD..GI..DQQRLIF.GKQL.DG........QKESTLHL | |
Retrocopy | IQIFIKTL<MGKTITLETEPLDTIENVKAKSQDNKGILADQQRLIFGGKQLKDGQ-IDHNKTQKESTLHL |
Parental | VLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRH |
VLR..GG.KKRKK..YTT.KKNK.KR.KVK...LKY.K.DENG.IS.L..EC.SDEC.AGVFM.SHF.RH | |
Retrocopy | VLRFCGGTKKRKK-CYTTTKKNKQKRNKVKVTALKYCKLDENGNISHLH*ECLSDECCAGVFMVSHFERH |
Parental | YCGKCCLTYCFNKPEDK |
YCGKC.LTYCFNKPEDK | |
Retrocopy | YCGKCPLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 139 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 181 .95 RPM |
SRP017611_liver | 0 .00 RPM | 119 .39 RPM |
SRP040447_lung | 0 .00 RPM | 178 .79 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 156 .32 RPM |