Parental gene:

RBMXL1, ENSDNOG00000017199

Aliases:None
Description:RNA binding motif protein, X-linked-like 1 [Source:HGNC Symbol;Acc:25073]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_4074:6568..10266(-)


>ENSDNOG00000017199
ATGGTTGAAGCAGACCGTCCGGGAAAGCTCTTCATTGGAGGGCTCAATACAGAAACAAATGAGAAAGCCCTTGAAGCAGT
GTTTGGCAAATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAGTCGAGAGGTTTTGCTTTTG
TCACCTTTGAAAGCCCGGCAGATGCCAAGGATGCAGCCAGAGACATGAATGGAAAGTCCTTAGATGGAAAAGCCATCAAG
GTAGAACAAGCCACTAAACCATCATTTGAAAGTGGTAGACGTGGACCACCTCCACCTCCAAGAAGCAGGGGCCCTCCTAG
AGGTCTTAGAGGCGGAAGAGGAGGAAGCGGAGGAACCAGAGGACCTCCCTCACGTGGAGGGCACATGGATGATGGTGGCT
ATTCCATGGATTTTAACATGACCTCTTCTAGGGGACCACTTCCAGTGAAAAGAGGACCACCACCACGAAGTGGGGGACCT
CCTCCTAAAAGATCTGCTCCCTCAGGACCAGTTCGCAGCAGCAGTGGAATGGGAGGGAGAGCTCCTGTTTCACGTGGAAG
AGATAGTTATGGAGGCCCGCCACGAAGGGAACCCTTGCCCTCTCGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGAT
ATTCTACTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAACTCACGTAGTG
CTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGGGACGGATAT
GGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGCCGTGATCGGGTTGGCAGACAAGAAAG
AGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAG
GTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 83 .23 RPM
SRP012922_cerebellum 71 .07 RPM
SRP012922_heart 33 .88 RPM
SRP012922_kidney 49 .83 RPM
SRP012922_liver 31 .43 RPM
SRP012922_lung 79 .87 RPM
SRP012922_quadricep_muscle 36 .35 RPM
SRP012922_spleen 106 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018962 possible_ortholog 4 retrogenes
retro_cfam_1106, retro_cfam_1244, retro_cfam_1649, retro_cfam_1914,
Dasypus novemcinctus ENSDNOG00000010420 within_species_paralog 16 retrogenes
retro_dnov_1343, retro_dnov_1380, retro_dnov_1463, retro_dnov_151, retro_dnov_1718, retro_dnov_180, retro_dnov_2034, retro_dnov_2076, retro_dnov_212, retro_dnov_213, retro_dnov_2217, retro_dnov_2367, retro_dnov_2581, retro_dnov_733, retro_dnov_778, retro_dnov_974,
Felis catus ENSFCAG00000004779 possible_ortholog 1 retrogene
retro_fcat_1903,
Homo sapiens ENSG00000147274 possible_ortholog 7 retrogenes
retro_hsap_23, retro_hsap_3074, retro_hsap_3587, retro_hsap_4144, retro_hsap_4846, retro_hsap_800, retro_hsap_91,
Loxodonta africana ENSLAFG00000005568 possible_ortholog 3 retrogenes
retro_lafr_1188, retro_lafr_276, retro_lafr_35,
Microcebus murinus ENSMICG00000006856 possible_ortholog 2 retrogenes
retro_mmur_1252, retro_mmur_661,
Myotis lucifugus ENSMLUG00000013209 possible_ortholog 5 retrogenes
retro_mluc_1630, retro_mluc_1746, retro_mluc_203, retro_mluc_2180, retro_mluc_80,
Monodelphis domestica ENSMODG00000014054 ortholog_one2many 1 retrogene
retro_mdom_1231,
Mustela putorius furo ENSMPUG00000001855 possible_ortholog 2 retrogenes
retro_mputfur_1539, retro_mputfur_956,
Mus musculus ENSMUSG00000031134 possible_ortholog 2 retrogenes
retro_mmus_170, retro_mmus_187,
Oryctolagus cuniculus ENSOCUG00000007220 possible_ortholog 1 retrogene
retro_ocun_3,
Pongo abelii ENSPPYG00000020771 possible_ortholog 3 retrogenes
retro_pabe_2548, retro_pabe_303, retro_pabe_766,
Rattus norvegicus ENSRNOG00000000866 possible_ortholog 1 retrogene
retro_rnor_268,
Ictidomys tridecemlineatus ENSSTOG00000006211 possible_ortholog 2 retrogenes
retro_itri_1205, retro_itri_1346,
Tupaia belangeri ENSTBEG00000001154 possible_ortholog 1 retrogene
retro_tbel_1919,
Tursiops truncatus ENSTTRG00000007322 possible_ortholog 1 retrogene
retro_ttru_1450,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_696 76.96 55.50
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2. retro_dnov_1436 91.28 54.99
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3. retro_dnov_2205 78.11 50.90
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Download FASTA sequences of all ENSDNOG00000017199 retrocopies