RetrogeneDB ID: | retro_itri_1205 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393400.1:4559797..4560461(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBMX | ||
Ensembl ID: | ENSSTOG00000006211 | ||
Aliases: | None | ||
Description: | RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910] |
Percent Identity: | 63. % |
Parental protein coverage: | 56.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | ADRPGKLFIGGLNTETNEKAL--EAVFGKYG-RIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN |
AD.PG.LFIG.LNTET.......E.VFGK.G..I.E.LLMK.RET.KSR.FA..TF.SPADAKDAA.D.N | |
Retrocopy | ADGPGRLFIGDLNTETXXXXXTPEVVFGKFG<SI*EILLMKARET-KSRSFAGITFQSPADAKDAAKDTN |
Parental | GKSLDGKAIKVEQATKPSFESGRR-GPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMHFN |
GKSL.GK.IK.E.A.KPSFE.G.R...P...R.RGPPR.LR.GRGGSGGTR..PSR.GH.DD.GY..... | |
Retrocopy | GKSLHGKTIKGERANKPSFEGGSR*RLPSLSRNRGPPRSLRCGRGGSGGTRWRPSRAGHLDDDGYTLNLS |
Parental | MSSSRGPLPVKRGPPPRSGGPPPK-RSAPSGPVRSSSGMGG-RAPVSRGRDSYG-GPPRREPLPSRRDVY |
.SSSRGP.PVKRGP..RS..PP.K.RS.PS.P..S.S..GG...P.S.GR..YG...P.RE...SRRD.Y | |
Retrocopy | VSSSRGPFPVKRGPTSRSRDPPLK<RSGPSAPTKSKSSVGG>EVPGSPGRENYG<RGPCREQVSSRRDDY |
Parental | LSPRDDGYSTKDSYSSR |
.SPRD.GYS.KDSY.SR | |
Retrocopy | VSPRDAGYSAKDSYASR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |