RetrogeneDB ID: | retro_lafr_276 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_11:49445607..49446328(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBMX | ||
Ensembl ID: | ENSLAFG00000005568 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.85 % |
Parental protein coverage: | 61.64 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | RGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSY |
.GP.P....PPP....P.......SG...R..VS.GR..Y.GPP.REPLPS.RD.YLSPRDDG.STKDSY | |
Retrocopy | KGPLPVKT*PPP*SRGPPPK*SAPSGPVSRT-VSCGRNCYSGPPQREPLPSHRDAYLSPRDDGCSTKDSY |
Parental | SSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGS-YRDSYESYG |
S.RDYP.S.DTRD.APPPRDYTY.DYGHSSSRDDYPSRGYSDRDGYGRD.DYSDHPS....YR.SYESY. | |
Retrocopy | SCRDYPNSYDTRDFAPPPRDYTYCDYGHSSSRDDYPSRGYSDRDGYGRDCDYSDHPSDVT<YRNSYESYS |
Parental | NSRSAPPTRGPPPSYGGSSRYDDYSSSRDG-YGGSRDSYS-SSRSDLYSSGRDRVGRQERGLPPSMERGY |
NS.SAP.TRG.....GGSS..DDYSS..DG.....RD.YS...R.DLYSSG.DRVG..ERGL..SMERGY | |
Retrocopy | NSSSAPRTRGSLTFSGGSSC*DDYSSPHDG>FCRRRDNYS>GRRGDLYSSGQDRVGG*ERGLAHSMERGY |
Parental | PPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY |
.PPRDSYSSSS..APRG.G.GGSRSD.GG..SRY | |
Retrocopy | RPPRDSYSSSSCKAPRGSGCGGSRSDGGGCISRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |