RetrogeneDB ID: | retro_cfam_1244 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 27:26996307..26997294(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000025219 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBMX | ||
Ensembl ID: | ENSCAFG00000018962 | ||
Aliases: | None | ||
Description: | RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910] |
Percent Identity: | 83.93 % |
Parental protein coverage: | 84.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | DAKDAARDMNGKSLDGKAIKVE-QATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHM |
D..D.AR.MNGKSL.GKAIKV..QATKPSFE.GR.GPPPPPRSRG.PRGLR.GRG..GGTRGPP.RGGHM | |
Retrocopy | DTMDSAREMNGKSLYGKAIKVD<QATKPSFENGRHGPPPPPRSRGSPRGLRRGRGANGGTRGPPLRGGHM |
Parental | DDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPL |
DDGGYSM.FNMS.SRGPL.VKRGP.PRSGGPPP.RSAPSGPVRSSS.M.GRAPVS.GRDS.GGPPRREPL | |
Retrocopy | DDGGYSMSFNMSFSRGPLLVKRGPSPRSGGPPPERSAPSGPVRSSSRMRGRAPVSHGRDSDGGPPRREPL |
Parental | PSRRDVYLSPRDDGYSTKDS-YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR |
PS.RDVYLSPRDDGYSTK...YSSRDYP.S.DTRDYAPPPRDYT..DYGHSSS.DDYPSRGYSDRDGYG. | |
Retrocopy | PSPRDVYLSPRDDGYSTKKA<YSSRDYPNSHDTRDYAPPPRDYTNCDYGHSSSPDDYPSRGYSDRDGYGP |
Parental | DRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSY-GGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS |
D.DYSDHPSGGSYRDS.ESYGNSRSAPPTRGP.PSY..GSSRYDDYSSS.D..GG.RD.Y.SS.SDLYSS | |
Retrocopy | DPDYSDHPSGGSYRDS*ESYGNSRSAPPTRGPVPSY<RGSSRYDDYSSSHDRFGGNRDNYPSSWSDLYSS |
Parental | GRDRVGRQERGL-PPSMERGYPPPRDSYSSSSRG-APRGGGRGGSRSDRGGGRSRY |
G.DRVGRQERGL.P.S...GYPPPRDSYSSSSRG.APRGGG.GGS.SDRGGGRSRY | |
Retrocopy | GCDRVGRQERGL>PTS-KKGYPPPRDSYSSSSRG<APRGGGCGGSQSDRGGGRSRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 44 .98 RPM |
SRP017611_brain | 0 .00 RPM | 22 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .06 RPM |
SRP017611_liver | 0 .00 RPM | 15 .88 RPM |