RetrogeneDB ID: | retro_cfam_1649 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:22606894..22607898(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBMX | ||
Ensembl ID: | ENSCAFG00000018962 | ||
Aliases: | None | ||
Description: | RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910] |
Percent Identity: | 80.83 % |
Parental protein coverage: | 85.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM |
KMVEA..PGKLFIGGLNTETNEKA.E.VFGKYG.IVEVLLMKDRETNKSRGFAFVTFESP.DAKDAARDM | |
Retrocopy | KMVEANHPGKLFIGGLNTETNEKAFEEVFGKYGQIVEVLLMKDRETNKSRGFAFVTFESPTDAKDAARDM |
Parental | NGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFN |
N.KSLDGK.IKVEQ.TKPSFESGR.G...P.RSRGPPRGL.G.RGGSGG.RG.PS.GGHMDDGGYSMNFN | |
Retrocopy | NEKSLDGKPIKVEQTTKPSFESGRHGLLQPSRSRGPPRGLTGRRGGSGGIRGLPSCGGHMDDGGYSMNFN |
Parental | MSSSRGPLPVKRGPP-PRSGGPPP-KRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYL |
M.SS.GPLPVKRGPP.P...G.PP.KRSAPSGPV.SSSGMGGR.PVS.G.DS.GGPPR.EPLPS.RDVYL | |
Retrocopy | MNSSGGPLPVKRGPP>PPQSGGPPLKRSAPSGPVHSSSGMGGRVPVSCGKDSCGGPPRKEPLPSHRDVYL |
Parental | SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYS-DRDGYGRDRDYSDH |
SPRDDGYSTKDSYSSRDYP.S...RDYAP.PR.YTY.D..GHSSS..DYPSRGY..DRDGYG.D.DYSDH | |
Retrocopy | SPRDDGYSTKDSYSSRDYPNSYQKRDYAPSPREYTYHD<HGHSSSHNDYPSRGYR<DRDGYGHDCDYSDH |
Parental | PSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL |
PSGGS.RDS..S.GNS.SAPP..GPPPS.GGSS..DDYSSSRD.Y.GS..SYSSS..DL | |
Retrocopy | PSGGS*RDSFDSNGNSHSAPPI*GPPPSNGGSS-HDDYSSSRDRYDGSQVSYSSSQRDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 44 .98 RPM |
SRP017611_brain | 0 .00 RPM | 22 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .06 RPM |
SRP017611_liver | 0 .00 RPM | 15 .88 RPM |