Parental gene:

KPNA2, ENSECAG00000020573

Aliases:None
Description:karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395]
Organism:Horse (Equus caballus)
Coordinates:11:14805665..14813589(+)


>ENSECAG00000020573
ATGTCCTCCAACGAGAATGCCAATTCCCCGGCTGCCCGCCTTAACAGATTCAAGAACAAGGGGAAAGACAGCACAGAAAT
GAGGCGGCGCCGAATAGAAGTTAATGTGGAGCTGAGGAAAGCTAAGAAAGATGACCAGATGCTGAAAAGGAGAAATGTAA
GCTCCTTTCCTGATGATGCTACTTCTCCGCTACAGGAAAACCGCAACAACCAGGGCACTGTAAATTGGTCTGTTGAGGAT
ATTGTCAAAGGCGTAAACAGCAACAATTTGGAAAGCCAGCTCCAAGCTACTCAAGCTGCTAGGAAACTGCTTTCTAGAGA
AAAACAGCCCCCCATAGACAACATAATCCGGGCTGGTTTGATTCCAAAATTTGTGTCCTTCTTGGGCAGAACTGATTGTA
GTCCCATTCAGTTTGAGTCTGCTTGGGCCCTCACTAACATCGCTTCCGGGACATCAGAACAGACCAAGGCTGTGGTAGAG
GGAGGTGCTATCCCAGCATTCATTTCTCTGTTGGCATCTCCCCACGCCCACATCAGTGAACAAGCCGTATGGGCTCTAGG
AAACATTGCAGGTGATGGTTCGGTTTTCCGAGACTTGGTGATCAAGTATGGTGCAGTTGACCCGCTGTTGGCTCTTCTTG
CAGTTCCTGATATGTCATCTTTGGCATGTGGTTACTTACGTAATCTTACTTGGACACTTTCAAACCTTTGTCGCAACAAG
AATCCTGCACCCCCATTAGATGCTGTTGAGCAAATTCTTCCCACTTTAGTTCGTCTCCTGCATCATGATGATCCAGAAGT
ATTAGCAGATACCTGTTGGGCCATTTCCTACCTTACCGATGGTCCGAATGAACGGATTGAAATGGTCGTGAAAACAGGAG
TGGTACCCCAACTTGTAAAGCTTCTAGGATCTACTGAATTGCCAATTGTGACTCCTGCACTAAGAGCCATAGGAAATATC
GTCACTGGGACAGACGAACAGACTCAGGTTGTAATAGATGCGGGAGCACTTGCCATCTTTCCCAGCCTGCTAACGAACCC
CAAAACTAACATTCAGAAGGAAGCTACGTGGACAATGTCAAACATCACAGCTGGCCGCCAGGACCAGATACAGCAAGTTG
TAAATCATGGATTAGTCCCATTCCTCGTTGGTGTTCTCTCTAAGGCAGACTTTAAGACACAAAAGGAAGCTGTATGGGCT
GTGACCAACTATACAAGTGGTGGAACAGTTGAACAGATTGTATACCTTGTTCATTGTGGCATAATAGAACCGTTGATGAA
CCTCTTAACTGCAAAAGACACCAAAATTATTCTGGTTATTCTGGATGCCATTTCAAATATCTTTCAGGCTGCTGAGAAAC
TAGGTGAAACTGAGAAACTTAGTATAATGATTGAAGAATGTGGAGGTCTGGACAAAATTGAAGCTCTACAAAACCATGAA
AATGAGTCTGTGTACAAAGCTTCGTTAAACTTGATTGAGAAGTATTTCTCTGTAGAGGAAGAGGAAGATCAAAATGTTGT
GCCAGAAACTACCTCTGAAGGCTATACATTCCAAGTTCAGGATGGCCCTCCGGGGACCTTTGACTTTTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 0 .77 RPM
SRP021940_cerebellum 1 .45 RPM
SRP021940_embryo 19 .77 RPM
SRP021940_placental_villous 5 .87 RPM
SRP021940_synovial_membrane 2 .66 RPM
SRP021940_testis 35 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018411 ortholog_one2many 3 retrogenes
retro_amel_1161, retro_amel_1318, retro_amel_440,
Bos taurus ENSBTAG00000012225 ortholog_one2one 1 retrogene
retro_btau_1830,
Canis familiaris ENSCAFG00000011598 ortholog_one2many 2 retrogenes
retro_cfam_648, retro_cfam_90,
Cavia porcellus ENSCPOG00000026318 possible_ortholog 1 retrogene
retro_cpor_46,
Dasypus novemcinctus ENSDNOG00000019151 possible_ortholog 6 retrogenes
retro_dnov_1184, retro_dnov_1811, retro_dnov_2161, retro_dnov_2279, retro_dnov_379, retro_dnov_693,
Equus caballus ENSECAG00000000554 within_species_paralog 1 retrogene
retro_ecab_981,
Echinops telfairi ENSETEG00000004445 ortholog_one2one 2 retrogenes
retro_etel_346, retro_etel_347,
Felis catus ENSFCAG00000001936 ortholog_one2one 2 retrogenes
retro_fcat_1176, retro_fcat_921,
Myotis lucifugus ENSMLUG00000027946 possible_ortholog 7 retrogenes
retro_mluc_1034, retro_mluc_1258, retro_mluc_1414, retro_mluc_288, retro_mluc_50, retro_mluc_52, retro_mluc_993,
Macaca mulatta ENSMMUG00000018256 possible_ortholog 3 retrogenes
retro_mmul_1140, retro_mmul_1635, retro_mmul_1947,
Monodelphis domestica ENSMODG00000003897 ortholog_one2many 1 retrogene
retro_mdom_271,
Mus musculus ENSMUSG00000018362 possible_ortholog 1 retrogene
retro_mmus_229,
Oryctolagus cuniculus ENSOCUG00000015913 ortholog_one2one 4 retrogenes
retro_ocun_1765, retro_ocun_1916, retro_ocun_426, retro_ocun_690,
Otolemur garnettii ENSOGAG00000027672 possible_ortholog 7 retrogenes
retro_ogar_1044, retro_ogar_1142, retro_ogar_1757, retro_ogar_2008, retro_ogar_464, retro_ogar_477, retro_ogar_936,
Pongo abelii ENSPPYG00000008569 ortholog_one2many 1 retrogene
retro_pabe_3501,
Rattus norvegicus ENSRNOG00000015329 possible_ortholog 1 retrogene
retro_rnor_42,
Sarcophilus harrisii ENSSHAG00000011391 ortholog_one2one 1 retrogene
retro_shar_165,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1017 98.49 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ecab_1123 97.16 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSECAG00000020573 retrocopies