Parental gene:

SUMO1, ENSEEUG00000013161

Aliases:None
Description:small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_2608:307..47499(-)


>ENSEEUG00000013161
ATGTCTGATCAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGAAGGAAGGAGAATATATTAAACTCAAAGTAAT
TGGGCAGGATAGCAGTGAGATTCACTTTAAAGTGAAAATGACTACGCATCTCAAGAAGCTCAAAGAATCATACTGTCAAA
GACAGGGAGTTCCAATGAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCACACTCCAAAAGAACTG
GGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAACAAACAGGGGGTCATTCAATGGCTTAG

Library Parental gene expression (RPM)
SRP017611_liver 14 .31 RPM
SRP017611_kidney 32 .07 RPM
SRP017611_brain 28 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009859 possible_ortholog 6 retrogenes
retro_btau_112, retro_btau_1512, retro_btau_1705, retro_btau_357, retro_btau_363, retro_btau_499,
Canis familiaris ENSCAFG00000012431 possible_ortholog 8 retrogenes
retro_cfam_1226, retro_cfam_1253, retro_cfam_139, retro_cfam_1815, retro_cfam_1912, retro_cfam_2048, retro_cfam_386, retro_cfam_985,
Equus caballus ENSECAG00000024693 ortholog_one2one 4 retrogenes
retro_ecab_199, retro_ecab_365, retro_ecab_570, retro_ecab_935,
Felis catus ENSFCAG00000031005 possible_ortholog 6 retrogenes
retro_fcat_1520, retro_fcat_218, retro_fcat_26, retro_fcat_472, retro_fcat_6, retro_fcat_862,
Myotis lucifugus ENSMLUG00000007504 possible_ortholog 2 retrogenes
retro_mluc_1346, retro_mluc_188,
Mustela putorius furo ENSMPUG00000000335 ortholog_one2one 2 retrogenes
retro_mputfur_257, retro_mputfur_33,
Otolemur garnettii ENSOGAG00000030345 possible_ortholog 1 retrogene
retro_ogar_215,
Pongo abelii ENSPPYG00000013083 possible_ortholog 3 retrogenes
retro_pabe_11, retro_pabe_1830, retro_pabe_775,
Pan troglodytes ENSPTRG00000012817 possible_ortholog 1 retrogene
retro_ptro_119,
Sorex araneus ENSSARG00000008205 ortholog_one2one 8 retrogenes
retro_sara_130, retro_sara_429, retro_sara_433, retro_sara_456, retro_sara_487, retro_sara_679, retro_sara_758, retro_sara_763,
Sarcophilus harrisii ENSSHAG00000011968 ortholog_one2one 1 retrogene
retro_shar_375,
Tursiops truncatus ENSTTRG00000000642 ortholog_one2one 4 retrogenes
retro_ttru_1646, retro_ttru_1652, retro_ttru_309, retro_ttru_399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_40 86.84 75.25
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2. retro_eeur_404 71.43 96.04
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3. retro_eeur_428 90.10 100.00
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4. retro_eeur_644 55.36 55.45
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5. retro_eeur_645 88.54 95.05
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6. retro_eeur_651 86.84 75.25
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Download FASTA sequences of all ENSEEUG00000013161 retrocopies