Parental gene:

CASP3, ENSG00000164305

Aliases:CASP3, CPP32, CPP32B, SCA-1
Description:caspase 3, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1504]
Organism:Human (Homo sapiens)
Coordinates:4:185548849..185570663(-)


>ENSG00000164305
ATGGAGAACACTGAAAACTCAGTGGATTCAAAATCCATTAAAAATTTGGAACCAAAGATCATACATGGAAGCGAATCAAT
GGACTCTGGAATATCCCTGGACAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATGTATAATAATTAATAATAAGA
ATTTTCATAAAAGCACTGGAATGACATCTCGGTCTGGTACAGATGTCGATGCAGCAAACCTCAGGGAAACATTCAGAAAC
TTGAAATATGAAGTCAGGAATAAAAATGATCTTACACGTGAAGAAATTGTGGAATTGATGCGTGATGTTTCTAAAGAAGA
TCACAGCAAAAGGAGCAGTTTTGTTTGTGTGCTTCTGAGCCATGGTGAAGAAGGAATAATTTTTGGAACAAATGGACCTG
TTGACCTGAAAAAAATAACAAACTTTTTCAGAGGGGATCGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATT
CAGGCCTGCCGTGGTACAGAACTGGACTGTGGCATTGAGACAGACAGTGGTGTTGATGATGACATGGCGTGTCATAAAAT
ACCAGTGGAGGCCGACTTCTTGTATGCATACTCCACAGCACCTGGTTATTATTCTTGGCGAAATTCAAAGGATGGCTCCT
GGTTCATCCAGTCGCTTTGTGCCATGCTGAAACAGTATGCCGACAAGCTTGAATTTATGCACATTCTTACCCGGGTTAAC
CGAAAGGTGGCAACAGAATTTGAGTCCTTTTCCTTTGACGCTACTTTTCATGCAAAGAAACAGATTCCATGTATTGTTTC
CATGCTCACAAAAGAACTCTATTTTTATCACTAA

Library Parental gene expression (RPM)
bodymap2_liver 12 .95 RPM
bodymap2_lung 21 .47 RPM
bodymap2_breast 18 .79 RPM
bodymap2_adipose 21 .05 RPM
bodymap2_adrenal 34 .96 RPM
bodymap2_skeletal_muscle 8 .42 RPM
bodymap2_thyroid 20 .26 RPM
bodymap2_prostate 13 .96 RPM
bodymap2_colon 17 .87 RPM
bodymap2_testis 29 .00 RPM
bodymap2_brain 18 .17 RPM
bodymap2_heart 10 .98 RPM
bodymap2_white_blood_cells 56 .44 RPM
bodymap2_lymph_node 37 .41 RPM
bodymap2_ovary 23 .65 RPM
bodymap2_kidney 21 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005740 ortholog_one2one 2 retrogenes
retro_cjac_2678, retro_cjac_3011,
Dasypus novemcinctus ENSDNOG00000013931 ortholog_one2many 1 retrogene
retro_dnov_1013,
Dipodomys ordii ENSDORG00000002554 ortholog_one2one 2 retrogenes
retro_dord_178, retro_dord_620,
Gorilla gorilla ENSGGOG00000025155 ortholog_one2one 1 retrogene
retro_ggor_402,
Macaca mulatta ENSMMUG00000012053 ortholog_one2one 1 retrogene
retro_mmul_114,
Nomascus leucogenys ENSNLEG00000010895 ortholog_one2one 1 retrogene
retro_nleu_1005,
Pongo abelii ENSPPYG00000015236 ortholog_one2one 1 retrogene
retro_pabe_312,
Pan troglodytes ENSPTRG00000016640 ortholog_one2one 1 retrogene
retro_ptro_310,
Rattus norvegicus ENSRNOG00000010475 ortholog_one2many 1 retrogene
retro_rnor_2747,
Sarcophilus harrisii ENSSHAG00000009178 ortholog_one2many 1 retrogene
retro_shar_404,
Ictidomys tridecemlineatus ENSSTOG00000003865 possible_ortholog 2 retrogenes
retro_itri_172, retro_itri_586,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_406 81.58 54.15
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Download FASTA sequences of all ENSG00000164305 retrocopies