Parental gene: | CASP3, ENSPTRG00000016640 |
| Aliases: | None |
| Description: | Pan troglodytes caspase 3, apoptosis-related cysteine peptidase (CASP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001012433] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 4:187958959..187981249(-) |
>ENSPTRG00000016640
ATGGAGAACACCGAAAACTCAGTGGATTCAAAATCCATTAAAAATTTGGAACCAAAGATCATACATGGAAGCCAATCGAT
GGACTCTGGAATATCCCTGGACAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATGTATAATCATTAATAATAAGA
ATTTTCATAAAAGCACTGGAATGACATCTCGGTCTGGTACAGATGTCGATGCAGCAAACCTCAGGGAAACATTCAGAAAC
TTGAAATATGAAGTCAGGAATAAAAATGATCTTACACGTGAAGAAATTGTGGAATTGATGCGTGATGTTTCTAAAGAAGA
TCACAGCAAAAGGAGCAGTTTTGTTTGTGTGCTTCTGAGCCATGGTGAAGAAGGAATAATTTTTGGAACAAATGGACCTG
TTGACCTGAAAAAAATAACAAACTTTTTCAGAGGGGATCGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATT
CAGGCCTGCCGTGGTACAGAACTGGACTGTGGCATTGAGACAGACAGTGGTGTTGATGATGACATGGCGTGTCATAAAAT
ACCAGTGGAGGCCGACTTCTTGTATGCATACTCCACAGCACCTGGTTATTATTCTTGGCGAAATTCAAAGGATGGCTCCT
GGTTCATCCAGTCGCTTTGTGCCATGCTGAAACAGTATGCCGACAAGCTTGAATTTATGCACATTCTTACCCGGGTTAAC
CGAAAGGTGGCAACAGAATTTGAGTCCTTTTCCTTTGACGCTACTTTTCATGCAAAGAAACAGATTCCATGTATTGTTTC
CATGCTCACAAAAGAACTCTATTTTTATCACTAA
ATGGAGAACACCGAAAACTCAGTGGATTCAAAATCCATTAAAAATTTGGAACCAAAGATCATACATGGAAGCCAATCGAT
GGACTCTGGAATATCCCTGGACAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATGTATAATCATTAATAATAAGA
ATTTTCATAAAAGCACTGGAATGACATCTCGGTCTGGTACAGATGTCGATGCAGCAAACCTCAGGGAAACATTCAGAAAC
TTGAAATATGAAGTCAGGAATAAAAATGATCTTACACGTGAAGAAATTGTGGAATTGATGCGTGATGTTTCTAAAGAAGA
TCACAGCAAAAGGAGCAGTTTTGTTTGTGTGCTTCTGAGCCATGGTGAAGAAGGAATAATTTTTGGAACAAATGGACCTG
TTGACCTGAAAAAAATAACAAACTTTTTCAGAGGGGATCGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATT
CAGGCCTGCCGTGGTACAGAACTGGACTGTGGCATTGAGACAGACAGTGGTGTTGATGATGACATGGCGTGTCATAAAAT
ACCAGTGGAGGCCGACTTCTTGTATGCATACTCCACAGCACCTGGTTATTATTCTTGGCGAAATTCAAAGGATGGCTCCT
GGTTCATCCAGTCGCTTTGTGCCATGCTGAAACAGTATGCCGACAAGCTTGAATTTATGCACATTCTTACCCGGGTTAAC
CGAAAGGTGGCAACAGAATTTGAGTCCTTTTCCTTTGACGCTACTTTTCATGCAAAGAAACAGATTCCATGTATTGTTTC
CATGCTCACAAAAGAACTCTATTTTTATCACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 11 .49 RPM |
| SRP007412_cerebellum | 17 .64 RPM |
| SRP007412_heart | 10 .55 RPM |
| SRP007412_kidney | 10 .57 RPM |
| SRP007412_liver | 15 .48 RPM |
| SRP007412_testis | 15 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000005740 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000013931 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000002554 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000164305 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000025155 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012053 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010895 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015236 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000010475 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000009178 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000003865 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_310 | 82.24 | 54.15 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000016640 retrocopies