Parental gene:

CASP3, ENSPTRG00000016640

Aliases:None
Description:Pan troglodytes caspase 3, apoptosis-related cysteine peptidase (CASP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001012433]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:187958959..187981249(-)


>ENSPTRG00000016640
ATGGAGAACACCGAAAACTCAGTGGATTCAAAATCCATTAAAAATTTGGAACCAAAGATCATACATGGAAGCCAATCGAT
GGACTCTGGAATATCCCTGGACAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATGTATAATCATTAATAATAAGA
ATTTTCATAAAAGCACTGGAATGACATCTCGGTCTGGTACAGATGTCGATGCAGCAAACCTCAGGGAAACATTCAGAAAC
TTGAAATATGAAGTCAGGAATAAAAATGATCTTACACGTGAAGAAATTGTGGAATTGATGCGTGATGTTTCTAAAGAAGA
TCACAGCAAAAGGAGCAGTTTTGTTTGTGTGCTTCTGAGCCATGGTGAAGAAGGAATAATTTTTGGAACAAATGGACCTG
TTGACCTGAAAAAAATAACAAACTTTTTCAGAGGGGATCGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATT
CAGGCCTGCCGTGGTACAGAACTGGACTGTGGCATTGAGACAGACAGTGGTGTTGATGATGACATGGCGTGTCATAAAAT
ACCAGTGGAGGCCGACTTCTTGTATGCATACTCCACAGCACCTGGTTATTATTCTTGGCGAAATTCAAAGGATGGCTCCT
GGTTCATCCAGTCGCTTTGTGCCATGCTGAAACAGTATGCCGACAAGCTTGAATTTATGCACATTCTTACCCGGGTTAAC
CGAAAGGTGGCAACAGAATTTGAGTCCTTTTCCTTTGACGCTACTTTTCATGCAAAGAAACAGATTCCATGTATTGTTTC
CATGCTCACAAAAGAACTCTATTTTTATCACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .49 RPM
SRP007412_cerebellum 17 .64 RPM
SRP007412_heart 10 .55 RPM
SRP007412_kidney 10 .57 RPM
SRP007412_liver 15 .48 RPM
SRP007412_testis 15 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005740 ortholog_one2one 2 retrogenes
retro_cjac_2678, retro_cjac_3011,
Dasypus novemcinctus ENSDNOG00000013931 ortholog_one2many 1 retrogene
retro_dnov_1013,
Dipodomys ordii ENSDORG00000002554 ortholog_one2one 2 retrogenes
retro_dord_178, retro_dord_620,
Homo sapiens ENSG00000164305 ortholog_one2one 1 retrogene
retro_hsap_406,
Gorilla gorilla ENSGGOG00000025155 ortholog_one2one 1 retrogene
retro_ggor_402,
Macaca mulatta ENSMMUG00000012053 ortholog_one2one 1 retrogene
retro_mmul_114,
Nomascus leucogenys ENSNLEG00000010895 ortholog_one2one 1 retrogene
retro_nleu_1005,
Pongo abelii ENSPPYG00000015236 ortholog_one2one 1 retrogene
retro_pabe_312,
Rattus norvegicus ENSRNOG00000010475 ortholog_one2many 1 retrogene
retro_rnor_2747,
Sarcophilus harrisii ENSSHAG00000009178 ortholog_one2many 1 retrogene
retro_shar_404,
Ictidomys tridecemlineatus ENSSTOG00000003865 possible_ortholog 2 retrogenes
retro_itri_172, retro_itri_586,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_310 82.24 54.15
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Download FASTA sequences of all ENSPTRG00000016640 retrocopies