RetrogeneDB ID: | retro_itri_172 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393405.1:1596726..1597554(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000028806 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000003865 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MENNENSVDSKSIKNFEQKTIHGSKSMDSGISLDNRYKMDYPEMGLCLIINNKNFHKSTGMAYRSGTDVD |
MENNEN.VDSKSIKNFE.K.IHGSKSMDSGISL.N.YKMDYPEMGLCLIINNKNFHKSTGMA.RSGTDVD | |
Retrocopy | MENNENPVDSKSIKNFEPKIIHGSKSMDSGISLGNYYKMDYPEMGLCLIINNKNFHKSTGMASRSGTDVD |
Parental | AANLREIFMNLKYEVRNKNDLTREEIVELLHNVSKEDHSKRSSFVCIILSHGDEGIIFGTNGPVDLKKLT |
AAN.RE.FMNLKYEVRNKNDLT.EEIV.L.HNVSKED.SKRSSF.C.ILS.GDEGIIFGTNGPV.LKKL. | |
Retrocopy | AANIRETFMNLKYEVRNKNDLTHEEIVALMHNVSKEDDSKRSSFICVILSQGDEGIIFGTNGPVVLKKLM |
Parental | SFFRGDYCRSLTGKPKLFIIQACRGTELDCGIETDSGIDDDMACHKIPVEADFLYAYSTAPGYYSWRNSK |
SFFRGDY.RSLTGKPKLFIIQAC.GT.LD.GIETDSGIDDD.ACHKIPVEADFLYAYSTAPGYYSWRNSK | |
Retrocopy | SFFRGDYFRSLTGKPKLFIIQACQGTGLDYGIETDSGIDDDRACHKIPVEADFLYAYSTAPGYYSWRNSK |
Parental | DGSWFIQSLCALLKQYAHKLEFMHILTRVNRKVATEFESFSLDSTFHAKKQIPCIVSMLTKELYFYP |
DGSWFIQSLCA.LK.YAHKLEFMHILT.V..KVATEFESFSLDS.FHAKKQIPCIVSMLTKELYFYP | |
Retrocopy | DGSWFIQSLCAMLKLYAHKLEFMHILTLV--KVATEFESFSLDSIFHAKKQIPCIVSMLTKELYFYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005740 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012511 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013931 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000002554 | 2 retrocopies | |
Homo sapiens | ENSG00000164305 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025155 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004809 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012053 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010895 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005985 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015236 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016640 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010475 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009178 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003865 | 2 retrocopies |
retro_itri_172 , retro_itri_586,
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