Parental gene:

CASP3, ENSPPYG00000015236

Aliases:None
Description:caspase 3, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1504]
Organism:Orangutan (Pongo abelii)
Coordinates:4:192852527..192879443(-)


>ENSPPYG00000015236
ATGGAGAACACTGAAAACTCAGTGGATTCAAAATCCATTAAAAATTTGGAACCAAAGGTCATACATGGAAGCAAATCGAT
GGACTCTGGAATATCCCTGGACAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATGTATAATAATTAATAATAAGA
ATTTTCATAAAAGCACTGGAATGGCATCTCGGTCTGGTACAGATGTCGATGCAGCAAACCTCAGGGAAACATTCAGAAAC
TTGAAATATGAAGTCAGGAATAAAAATGATCTTACACGTGAAGAAATTGTGGAACTGATGCGTGATGTTGCTAAAGAAGA
TCACAGCAAAAGGAGCAGTTTTGTTTGTGTGCTTCTGAGTCACGGTGAAGAAGGGATAATTTTTGGAACAAATGGGCCTG
TTGACCTGAGAAAAATAACAAACTTTTTCAGAGGGGATCGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATT
CAGGCCTGCCGTGGTACAGAACTGGACTGTGGCATTGAGACAGACAGTGGTGTTGATGATGACATGGCGTGTCATAAAAT
ACCAGTGGAGGCTGACTTCTTGTATGCATACTCCACAGCACCTGGTTATTATTCTTGGCGAAATTCAAAGGATGGCTCCT
GGTTCATCCAATCGCTTTGTGCCATGCTGAAACAGTACGCCGACAAGCTTGAATTTATGCACATTCTTACCCGGGTTAAC
CGAAAGGTGGCAACAGAGTTTGAGTCCTTTTCCCTTGACGCTACTTTTCATGCAAAGAAACAGATACCATGTATTGTTTC
CATGCTCACAAAAGAACTCTATTTTTATCACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 8 .29 RPM
SRP007412_cerebellum 17 .75 RPM
SRP007412_heart 5 .09 RPM
SRP007412_kidney 4 .77 RPM
SRP007412_liver 5 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005740 ortholog_one2one 2 retrogenes
retro_cjac_2678, retro_cjac_3011,
Dasypus novemcinctus ENSDNOG00000013931 ortholog_one2many 1 retrogene
retro_dnov_1013,
Dipodomys ordii ENSDORG00000002554 ortholog_one2one 2 retrogenes
retro_dord_178, retro_dord_620,
Homo sapiens ENSG00000164305 ortholog_one2one 1 retrogene
retro_hsap_406,
Gorilla gorilla ENSGGOG00000025155 ortholog_one2one 1 retrogene
retro_ggor_402,
Macaca mulatta ENSMMUG00000012053 ortholog_one2one 1 retrogene
retro_mmul_114,
Nomascus leucogenys ENSNLEG00000010895 ortholog_one2one 1 retrogene
retro_nleu_1005,
Pan troglodytes ENSPTRG00000016640 ortholog_one2one 1 retrogene
retro_ptro_310,
Rattus norvegicus ENSRNOG00000010475 ortholog_one2many 1 retrogene
retro_rnor_2747,
Sarcophilus harrisii ENSSHAG00000009178 ortholog_one2many 1 retrogene
retro_shar_404,
Ictidomys tridecemlineatus ENSSTOG00000003865 possible_ortholog 2 retrogenes
retro_itri_172, retro_itri_586,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_312 82.89 54.15
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Download FASTA sequences of all ENSPPYG00000015236 retrocopies