Parental gene:

Casp3, ENSRNOG00000010475

Aliases:Casp3, Lice
Description:Caspase-3 Caspase-3 subunit p17 Caspase-3 subunit p12 [Source:UniProtKB/Swiss-Prot;Acc:P55213]
Organism:Rat (Rattus norvegicus)
Coordinates:16:48560090..48578283(-)


>ENSRNOG00000010475
ATGGACAACAACGAAACCTCCGTGGATTCAAAATCCATTAATAATTTTGAAACAAAGACTATCCATGGAAGCAAGTCGAT
GGACTCTGGAATATATCTGGACAGCAGTTACAAAATGGATTACCCTGAAATGGGCTTGTGTATAATAATTAATAATAAGA
ACTTCCATAAAAGCACTGGAATGTCAGCTCGCAATGGTACCGATGTCGATGCAGCTAACCTCAGAGAGACATTCATGGCC
CTGAAATACGAAGTCAGGAATAAAAATGACCTTACTCGTGAAGAAATTATGGAATTGATGGATAGTGTTTCTAAGGAAGA
TCACAGCAAAAGGAGCAGTTTTGTGTGTGTGATTCTAAGTCATGGAGATGAAGGAGTAATTTTTGGAACGAACGGACCTG
TGGACCTGAAAAAACTAACTAGTTTCTTCAGAGGCGACTACTGCCGGAGTCTGACTGGAAAGCCGAAACTCTTCATCATT
CAGGCCTGCCGAGGTACAGAGCTGGACTGCGGTATTGAGACAGACAGTGGAACTGACGATGATATGGCATGCCAGAAGAT
ACCAGTGGAGGCCGACTTCCTGTATGCTTACTCTACCGCACCCGGTTACTATTCCTGGAGAAATTCAAGGGACGGGTCAT
GGTTCATCCAGTCACTTTGCGCCATGCTGAAACTGTACGCGCACAAGCTGGAATTCATGCACATCCTCACTCGTGTTAAC
CGGAAGGTGGCCACGGAATTTGAGTCCTTCTCCCTGGACGCCACTTTCCATGCAAAGAAACAGATCCCGTGTATTGTGTC
AATGCTCACAAAAGAACTGTACTTTTATCACTAA

Library Parental gene expression (RPM)
SRP017611_liver 21 .38 RPM
SRP017611_kidney 13 .19 RPM
SRP017611_brain 16 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005740 ortholog_one2many 2 retrogenes
retro_cjac_2678, retro_cjac_3011,
Cavia porcellus ENSCPOG00000012511 ortholog_one2many 2 retrogenes
retro_cpor_1203, retro_cpor_1450,
Dasypus novemcinctus ENSDNOG00000013931 ortholog_many2many 1 retrogene
retro_dnov_1013,
Dipodomys ordii ENSDORG00000002554 ortholog_one2many 2 retrogenes
retro_dord_178, retro_dord_620,
Homo sapiens ENSG00000164305 ortholog_one2many 1 retrogene
retro_hsap_406,
Gorilla gorilla ENSGGOG00000025155 ortholog_one2many 1 retrogene
retro_ggor_402,
Microcebus murinus ENSMICG00000004809 ortholog_one2many 2 retrogenes
retro_mmur_1389, retro_mmur_691,
Macaca mulatta ENSMMUG00000012053 ortholog_many2many 1 retrogene
retro_mmul_114,
Nomascus leucogenys ENSNLEG00000010895 ortholog_one2many 1 retrogene
retro_nleu_1005,
Otolemur garnettii ENSOGAG00000005985 ortholog_one2many 2 retrogenes
retro_ogar_1756, retro_ogar_3263,
Pongo abelii ENSPPYG00000015236 ortholog_one2many 1 retrogene
retro_pabe_312,
Pan troglodytes ENSPTRG00000016640 ortholog_one2many 1 retrogene
retro_ptro_310,
Sarcophilus harrisii ENSSHAG00000009178 ortholog_many2many 1 retrogene
retro_shar_404,
Ictidomys tridecemlineatus ENSSTOG00000003865 ortholog_many2many 2 retrogenes
retro_itri_172, retro_itri_586,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2747 79.29 61.01
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Download FASTA sequences of all ENSRNOG00000010475 retrocopies