RetrogeneDB ID: | retro_itri_586 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393303.1:11160164..11160995(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000003865 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MENNENSVDSKSIKN-FEQKTIHGSKSMDSGISLDNRYKMDYPEMGLCLIINNKNFHKSTGMAYRSGTDV |
MENNENSVDSKSIKN.FE.KTIHG.KSMDSGISLDNRYKMDYPEMGLCLIINNKNFHKSTGMA.RSGTDV | |
Retrocopy | MENNENSVDSKSIKN<FEPKTIHGNKSMDSGISLDNRYKMDYPEMGLCLIINNKNFHKSTGMASRSGTDV |
Parental | DAANLREIFMNLKYEVRNKNDLTREEIVELLHNVSKEDHSKRSSFVCIILSHGDEGIIFGTNGPVDLKKL |
DAANLREIFMNLKYEVRNKNDLTREEIVEL.HNVSKEDHSKRSSF.C.ILSHGDEGIIFGTNGPVDLK.L | |
Retrocopy | DAANLREIFMNLKYEVRNKNDLTREEIVELMHNVSKEDHSKRSSFICVILSHGDEGIIFGTNGPVDLKIL |
Parental | TSFFRGDYCRSLT-GKPKLFIIQACRGTELDCGIETDSGIDDDMACHKIPVEADFLYAYSTAPGYYSWRN |
TSFFRGDYCRSL..GKPKLFIIQACRGTELDCGIETDSGIDDD.ACHKIPVEADFLYAYSTAPGYYSWRN | |
Retrocopy | TSFFRGDYCRSLN>GKPKLFIIQACRGTELDCGIETDSGIDDDIACHKIPVEADFLYAYSTAPGYYSWRN |
Parental | SKDGSWFIQSLCALLKQYAHKLEFMHILTRVNRKVATEFESFSLDSTFHAKKQIPCIVSMLTKELYFYP |
SKDGS.FIQSLCALLKQYAHKLEFMHILTRVNRKVATEFE.FSLDSTFHAKKQIPCIVSMLTKELYFYP | |
Retrocopy | SKDGS*FIQSLCALLKQYAHKLEFMHILTRVNRKVATEFEFFSLDSTFHAKKQIPCIVSMLTKELYFYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005740 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012511 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013931 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000002554 | 2 retrocopies | |
Homo sapiens | ENSG00000164305 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025155 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004809 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012053 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010895 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005985 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015236 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016640 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010475 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009178 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003865 | 2 retrocopies |
retro_itri_172, retro_itri_586 ,
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