RetrogeneDB ID: | retro_shar_404 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841599.1:624777..625220(-) | ||
Located in intron of: | ENSSHAG00000009971 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000009178 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56. % |
Parental protein coverage: | 53.09 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | NKNDLTCKEIIELLYNVSKEDHSQRSSFVCVILSHGEEGIIFGTDGSVELKRLTYFFKGDKCKSLTGKP- |
.KNDLTC.E.IEL....SK.DHS.RSSF.CV..S..EEGII.G.DG..E......FF.G.K..S.TG... | |
Retrocopy | DKNDLTCQEAIELTSSFSKIDHS*RSSFICVLPSRSEEGIIVGRDGAHEF*KINEFFSGNK-RSVTGDM> |
Parental | KLFIIQACRGTELDCGIETD--SATDDVTCQKIPVEADFLYAYSTAPGYYSWRNSKDGSW-FIQSLCAVL |
KLFIIQ....T.LDCG...D.....D..TCQKI.VEADFLY..STAPGYYSWRN...GS...IQ.LC..L | |
Retrocopy | KLFIIQVSQDTKLDCGTY*DRRGTGDGITCQKITVEADFLYEQSTAPGYYSWRNA*NGSQ>VIQLLCTML |
Parental | KQYAYKLEIM |
K....K...M | |
Retrocopy | KLCVPKPKLM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005740 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012511 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013931 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000002554 | 2 retrocopies | |
Homo sapiens | ENSG00000164305 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025155 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004809 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012053 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010895 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005985 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015236 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016640 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010475 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009178 | 1 retrocopy |
retro_shar_404 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000003865 | 2 retrocopies |