Parental gene:

PPIA, ENSMMUG00000016638

Aliases:PPIA, CYPA
Description:Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:P62940]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:81542745..81547389(-)


>ENSMMUG00000016638
ATGGTCAACCCTACCGTGTTCTTCGACATTGCCGTCGACGGCGAGCCTTTGGGCCGCGTCTCCTTCGAGCTGTTTGCAGA
CAAGGTTCCAAAGACAGCAGAAAATTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTGGTTATAAGGGTTCCTGCTTTC
ACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACACGCCATAATGGCACTGGTGGCAAGTCCATCTATGGG
GAGAAATTTGAAGATGAGAACTTCATCCTAAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCCAACAC
AAATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGTCTTTGGCAAAGTGAAAG
AAGGCATGAATATTGTGGAGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTGCTGAC
TGTGGACAACTCGAATAA

Library Parental gene expression (RPM)
SRP007412_brain 61 .29 RPM
SRP007412_brain_prefrontal_cortex 179 .37 RPM
SRP007412_cerebellum 47 .33 RPM
SRP007412_heart 26 .03 RPM
SRP007412_kidney 38 .03 RPM
SRP007412_liver 49 .95 RPM
SRP007412_testis 92 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012003 possible_ortholog 12 retrogenes
Callithrix jacchus ENSCJAG00000011969 possible_ortholog 54 retrogenes
Cavia porcellus ENSCPOG00000002632 possible_ortholog 11 retrogenes
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
Homo sapiens ENSG00000196262 possible_ortholog 78 retrogenes
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
Loxodonta africana ENSLAFG00000011345 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000002016 possible_ortholog 20 retrogenes
Monodelphis domestica ENSMODG00000016089 possible_ortholog 9 retrogenes
Mus musculus ENSMUSG00000071866 ortholog_many2many 2 retrogenes
Oryctolagus cuniculus ENSOCUG00000016662 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
Pongo abelii ENSPPYG00000017586 ortholog_many2many 12 retrogenes
Pongo abelii ENSPPYG00000017587 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000023064 ortholog_one2many 77 retrogenes
Rattus norvegicus ENSRNOG00000006423 ortholog_many2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000017062 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000010215 possible_ortholog 10 retrogenes
Tupaia belangeri ENSTBEG00000017484 ortholog_one2many 77 retrogenes
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1 96.95 99.39
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2. retro_mmul_5 98.17 99.39
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3. retro_mmul_8 98.79 100.00
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4. retro_mmul_13 94.48 98.79
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5. retro_mmul_56 99.39 100.00
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6. retro_mmul_132 97.58 100.00
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7. retro_mmul_141 96.99 100.00
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8. retro_mmul_161 90.62 96.97
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9. retro_mmul_195 97.58 100.00
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10. retro_mmul_245 99.39 100.00
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Download FASTA sequences of all ENSMMUG00000016638 retrocopies