RetrogeneDB ID: | retro_cpor_1395 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:26269462..26269836(+) | ||
Located in intron of: | ENSCPOG00000006154 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000021808 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSCPOG00000002632 | ||
Aliases: | None | ||
Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:H0UZ02] |
Percent Identity: | 70.45 % |
Parental protein coverage: | 78.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAG- |
F.ALSTGEKGF.YKGSCFHRI.PGF.CQG.DFT.HNGT..KSIY..KF..ENFIL..T......MANAG. | |
Retrocopy | FHALSTGEKGFCYKGSCFHRITPGFICQGADFTYHNGTDNKSIYEKKFGNENFILRQT----FAMANAG> |
Parental | PNTNGSQFFICTAKT-EWLDGKHVVFGKVKEGMNTVEAMERFGS-RNGKTSKKITITDCGQL |
PNTNGS.FFICTAKT...LDGKH.V..KVK..MNTV.AME.F.S..N.KT..K.TITDCGQL | |
Retrocopy | PNTNGSEFFICTAKT<QELDGKHIVIQKVKGDMNTVDAMEHFAS<SNEKTRGKGTITDCGQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 464 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 448 .59 RPM |
SRP017611_liver | 0 .00 RPM | 277 .27 RPM |
SRP040447_lung | 0 .00 RPM | 585 .22 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 191 .42 RPM |