RetrogeneDB ID: | retro_cpor_642 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_21:8783226..8783666(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSCPOG00000002632 | ||
Aliases: | None | ||
Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:H0UZ02] |
Percent Identity: | 56.21 % |
Parental protein coverage: | 90.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ADGEPLGRVSFELYADKVPKTAAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIY |
A.G.PLG..SFEL..DK.PKT..EN.F.A..TGEK..GYK.SC..RII.GFM..GGD.T.H..TGGK... | |
Retrocopy | AHGKPLGCISFELFSDKLPKTT-EN>FFAVNTGEKTLGYKCSCSLRIILGFML*GGDVTGHSATGGKCL* |
Parental | GEKFDDENFILKHTGPGILSMANAGPN-TNGSQFFICTAKTEWLDGKHVVFGKVKEGMNT-VEAMERFGS |
.EKF..E.FILKHTGPGI...A...P....G.QFFIC..K...L..K...F.KVKE.MN....AM.RFGS | |
Retrocopy | -EKFS-EKFILKHTGPGIFYVASTEPK<NKGFQFFICITKSKRLESKLMFFRKVKEDMNS<QGAMKRFGS |
Parental | RNGKTSKKITITD |
.N..T..KI.I.D | |
Retrocopy | GNCRTRRKINIAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 464 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 448 .59 RPM |
SRP017611_liver | 0 .00 RPM | 277 .27 RPM |
SRP040447_lung | 0 .00 RPM | 585 .22 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 191 .42 RPM |