RetrogeneDB ID: | retro_cpor_1152 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:61310187..61310589(-) | ||
Located in intron of: | ENSCPOG00000003664 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSCPOG00000002632 | ||
Aliases: | None | ||
Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:H0UZ02] |
Percent Identity: | 60.99 % |
Parental protein coverage: | 83.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MVNPTVFFDIAADGEPLGRVSFELYADKVPKTAAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTR |
M.N.T.FF..A.....LG...FEL..DKV.KTA.E.F..L.T..K....KG.CFHR.IPG.MC.G.DFT. | |
Retrocopy | MGNSTIFFNTATNNKLLGFLPFELFVDKVSKTA-EKFHVLNTSQK*ISFKGFCFHRTIPGLMCRGSDFTC |
Parental | HNGTG-GKSIYGEKFDDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWL-DGKHVVFGKVKEGM |
H...G..KSIYGEK.D..NF.LKHTGPGI..M.NAG..NTN.SQ.FICTA.TEWL.DGKH.VF.K.KE.M | |
Retrocopy | HKTLG<AKSIYGEKVDGQNFTLKHTGPGI--MGNAG<TNTNSSQSFICTA*TEWL<DGKHMVFRKLKEDM |
Parental | N |
N | |
Retrocopy | N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 464 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 448 .59 RPM |
SRP017611_liver | 0 .09 RPM | 277 .27 RPM |
SRP040447_lung | 0 .08 RPM | 585 .22 RPM |
SRP040447_skeletal_muscle | 0 .04 RPM | 191 .42 RPM |