RetrogeneDB ID: | retro_ocun_509 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:69564822..69565557(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025704 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSOCUG00000003844 | ||
Aliases: | None | ||
Description: | ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370] |
Percent Identity: | 97.14 % |
Parental protein coverage: | 98.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AEEEQRKRIPLVPENLLKKRKASQALKATQAKQELLAKKIRKRKEFRFKRLESFVHDSWRQRRDAVRLRR |
AEEEQRKRIPLVPENLLKKRKA.QALKATQAKQELLAK..RKRKEFRFKRLESFVH.SWRQRRDAVRLRR | |
Retrocopy | AEEEQRKRIPLVPENLLKKRKAYQALKATQAKQELLAKRERKRKEFRFKRLESFVHNSWRQRRDAVRLRR |
Parental | LKVKPRALEMPDKHSLAFVVRLQRINGVSSLVERTIARLRLKKLFSGVFVQVTPQNLKLLRIVEPYVTWG |
LKVKPRALEMPDK.SLAFVVRLQRINGVSSLVERTIARLRLKKLFSGVFVQVTP.NLKLLRIVEPYVTWG | |
Retrocopy | LKVKPRALEMPDKRSLAFVVRLQRINGVSSLVERTIARLRLKKLFSGVFVQVTPPNLKLLRIVEPYVTWG |
Parental | FPNLKSVRELILKRGQARVNDKSIPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKYFQNIARFLRPFQL |
FPNLKSVRELILKRGQARVN.KSIPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKYFQNIARFLRPFQL | |
Retrocopy | FPNLKSVRELILKRGQARVNNKSIPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKYFQNIARFLRPFQL |
Parental | SVARHASKNRVGFLKEMGSPGYRGERINQLIRQLN |
SVARHASKNRVGFLKEMGSPGYRGERINQLIRQLN | |
Retrocopy | SVARHASKNRVGFLKEMGSPGYRGERINQLIRQLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .32 RPM | 14 .18 RPM |
SRP017611_kidney | 2 .84 RPM | 20 .47 RPM |
SRP017611_liver | 1 .46 RPM | 11 .79 RPM |