RetrogeneDB ID: | retro_ocun_278 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:25928234..25928683(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSOCUG00000003844 | ||
Aliases: | None | ||
Description: | ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370] |
Percent Identity: | 57.96 % |
Parental protein coverage: | 61.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | QRINGVSSLVERTIARLRLK-KLFSGVFVQVTPQNLKLL-RIVEPYVTWGFPNLKSVRELILKRGQAR-V |
Q.INGV..LV.RT..RL.L.....S.V.....PQNLK.L.R..EP.VTW.FPN.KS...LIL..G..R.V | |
Retrocopy | QKINGVNLLVQRTMERLKLQ<RKYSLVPLSKYPQNLKVL>RMIEPQVTWVFPNWKSLQKLIL-KGKQR<V |
Parental | NDKSIPLTDNTVIEEHL-GRFGVICLEDLIHEIAFPG-KYFQNIARFLRPFQLSVARHASKNRVGFLKEM |
N....PL.D.TVIEEHL.G..G.ICLEDLIHE...PG.K.FQ.I...L..F.LSVA.HA.K..V..LKEM | |
Retrocopy | NNVTFPLADTTVIEEHL<GETGIICLEDLIHEVCLPG>K*FQ-ISWLLCLFHLSVACHATKHEVNVLKEM |
Parental | GSPGYRGERINQLIRQL |
GSPGY.GE.INQ...QL | |
Retrocopy | GSPGY*GECINQITHQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .47 RPM |
SRP017611_liver | 0 .00 RPM | 11 .79 RPM |