Parental gene:

ENSOCUG00000016204

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:13:37687025..37690344(-)


>ENSOCUG00000016204
ATGTCGCACAAACAGATTTACTATTCGGACAAGTACGACGACGAGGAGTTCGAGTACCGGCATGTTATGTTGCCCAAGGA
CATAGCCAAGCTGGTCCCTAAAACCCATTTGATGTCTGAATCTGAATGGAGGAACCTTGGCGTTCAGCAGAGTCAGGGAT
GGGTCCATTATATGATCCACGAACCAGAACCCCACATCCTGCTGTTCCGGCGGCCACTACCGAAGAAACCGAAGAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 1 .77 RPM
SRP017611_kidney 1 .52 RPM
SRP017611_liver 0 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000033635 ortholog_one2many 10 retrogenes
retro_cjac_13, retro_cjac_1441, retro_cjac_1478, retro_cjac_1779, retro_cjac_2040, retro_cjac_2212, retro_cjac_2649, retro_cjac_276, retro_cjac_57, retro_cjac_876,
Dipodomys ordii ENSDORG00000003764 possible_ortholog 6 retrogenes
retro_dord_25, retro_dord_290, retro_dord_599, retro_dord_64, retro_dord_647, retro_dord_739,
Equus caballus ENSECAG00000003460 ortholog_one2one 1 retrogene
retro_ecab_975,
Echinops telfairi ENSETEG00000003337 ortholog_one2one 4 retrogenes
retro_etel_1246, retro_etel_1938, retro_etel_239, retro_etel_497,
Felis catus ENSFCAG00000001347 ortholog_one2one 1 retrogene
retro_fcat_1041,
Homo sapiens ENSG00000173207 ortholog_one2many 1 retrogene
retro_hsap_27,
Gorilla gorilla ENSGGOG00000013419 ortholog_one2many 4 retrogenes
retro_ggor_10, retro_ggor_1070, retro_ggor_2739, retro_ggor_659,
Loxodonta africana ENSLAFG00000032213 ortholog_one2one 1 retrogene
retro_lafr_243,
Mus musculus ENSMUSG00000028044 ortholog_one2one 1 retrogene
retro_mmus_280,
Nomascus leucogenys ENSNLEG00000011532 ortholog_one2one 3 retrogenes
retro_nleu_1098, retro_nleu_2592, retro_nleu_411,
Otolemur garnettii ENSOGAG00000006384 possible_ortholog 10 retrogenes
retro_ogar_1673, retro_ogar_1703, retro_ogar_1713, retro_ogar_1983, retro_ogar_2317, retro_ogar_245, retro_ogar_3310, retro_ogar_450, retro_ogar_530, retro_ogar_877,
Pongo abelii ENSPPYG00000000768 ortholog_one2one 3 retrogenes
retro_pabe_1143, retro_pabe_3625, retro_pabe_717,
Pan troglodytes ENSPTRG00000001398 ortholog_one2one 4 retrogenes
retro_ptro_2769, retro_ptro_3100, retro_ptro_558, retro_ptro_944,
Rattus norvegicus ENSRNOG00000042561 ortholog_one2one 1 retrogene
retro_rnor_97,
Sorex araneus ENSSARG00000012383 ortholog_one2one 2 retrogenes
retro_sara_667, retro_sara_77,
Sus scrofa ENSSSCG00000029737 ortholog_one2one 1 retrogene
retro_sscr_730,
Vicugna pacos ENSVPAG00000012182 ortholog_one2one 1 retrogene
retro_vpac_532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_18 79.75 100.00
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2. retro_ocun_1389 97.44 98.73
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Download FASTA sequences of all ENSOCUG00000016204 retrocopies