RetrogeneDB ID:

retro_etel_239

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_404:72230..72471(+)
Located in intron of:ENSETEG00000015342
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000003337
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_239
ATGTCGCACAAGCAGATTTACTATTCGGACAAATACGACGACGAGGAGTTCGAGTACAGGCACGTCATGTTGCCCAAGGA
TATAGCCGAGCTGGTCCCGAAAACCCACTTGATGTCTGAATCTGAATGGAGGAATCTTGGCGTCCAGCAGAGTCAGGGAT
GGGTCCATTATATGTATGATCCATGAACCAGAACCTCACATCTTGCTGTTCCGGCGGCCGCTGCCCAAGAAGCCAAAGAA
A

ORF - retro_etel_239 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.46 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEP-EP--HIL
MSHKQIYYSDKYDDEEFEYRHVMLPKDIA.LVPKTHLMSESEWRNLGVQQSQGWVHYM...P.EP..HIL
RetrocopyMSHKQIYYSDKYDDEEFEYRHVMLPKDIAELVPKTHLMSESEWRNLGVQQSQGWVHYM-YDP>EPEPHIL
ParentalLFRRPLPKKPKK
LFRRPLPKKPKK
RetrocopyLFRRPLPKKPKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_239 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 66 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG0000003363510 retrocopies
Dipodomys ordii ENSDORG000000037646 retrocopies
Equus caballus ENSECAG000000034601 retrocopy
Echinops telfairi ENSETEG0000000126010 retrocopies
Echinops telfairi ENSETEG00000003337 4 retrocopies
Felis catus ENSFCAG000000013471 retrocopy
Homo sapiens ENSG000001732071 retrocopy
Gorilla gorilla ENSGGOG000000134194 retrocopies
Loxodonta africana ENSLAFG000000322131 retrocopy
Mus musculus ENSMUSG000000280441 retrocopy
Nomascus leucogenys ENSNLEG000000115323 retrocopies
Oryctolagus cuniculus ENSOCUG000000162042 retrocopies
Otolemur garnettii ENSOGAG0000000638410 retrocopies
Pongo abelii ENSPPYG000000007683 retrocopies
Pan troglodytes ENSPTRG000000013984 retrocopies
Rattus norvegicus ENSRNOG000000425611 retrocopy
Sorex araneus ENSSARG000000123832 retrocopies
Sus scrofa ENSSSCG000000297371 retrocopy
Vicugna pacos ENSVPAG000000121821 retrocopy



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